Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04248 ATGAAGGGAGAAAGCGAGTGCTTCGAGTGCCTCCAACTCCGTATCAACTCGGATTTCTCTGATCAACTCGTCTTCAATCATGCCATTTCCGATTATCCTTTTCCGTTCGGATCATCAGCTATTCTCGATATTACTGGTTCAGCAGAAGGTGAATCTTCAAGTGGTCAGTTTATATTGCAGTATATGTCTAGTCATGAGAACTCTTGTTTTACCAATTATGTAAATGGTGGAAATGAATTTGCCTTATCCGATGAGTCTGAAACTGGTAAAGCTCCATTCAGGAATAGGACTTGTAATCATTCTGGAAAGTTTCCTTGCTCGAGAACAATCACTTCGCTTTCCCCAAACGCTCGTGTTGACAAGTGTTCCTTTTCTGTACTTCAAGATGTTGCCAATGATTTCTTGTCCGGGTTAACTGAAGGTCACGTGTTAGAATCACTTGGTCTTTTCATTGAAGGGAAAGCATCTGGGCGGGACAGTATGAATTTCCTTAGGTTAATTGGGTTTCCATCATTTGAAGAACACACCTTTCCAGGCACTTTGAGGCATCCAAACATAGCTTCTGTACTCGCAATACTAAAAGCGTCTGACCATACTAACATAGTGCTTCCGAAGACTCCATACAACTTGGAAAGTATTCTTCATTTTAACCCCAATGCAATAAAGTCTGATTGGAATAGAAGATTTCTTATGTATCAGCTACTCTCGGCTTTATTGTACTTGCACGGTTTAGGGGTTTCCCATGGTAATATATGCCCGTCCAATATCATGTTGACGGACTCATTATGGTCTTGGCTGAGATTATGGAATGAACCTGTATTGGAATCTAATTTAACTTTGCAAGAGAGTGAGAATGTTAATTCAAAACCTGCAAAAATAGGTTGTTGTAATGGTAGCTGTCATTCTAATGACGTTTATGCCGATCTAAAGCTTTCTCCACAAATAGATTGGCATTCTAGCTTTCATCAGTGGTGGAGAGGAGAATTAAGTAATTTTGAGTATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTTGTTGACTTTAGCTCAAAACCGGATGATAATTGTGATGCAGGGTGGCGAGACTTAAGCAAGAGCAAATGGCGCTTGGCAAAAGGTGATGAACAGTTGGATTTCACCTATTCAACGTCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCGGAATTGGCTGTCTGCAGCTATAAAGCAAGAAGGTTGCCTTTGAGTGTTCTTCGGATGGCTGTTCGTTCAGTGTACGAACCTAATGAATATCCTTCTTCAATGCAGAGGCTCTATCAATGGACGCCTGATGAATGCATTCCAGAGTTTTATTGTGATGGCCAAATTTTTAGGTCGATACATGATGGTATGGCTGATTTGGCTATACCTTCTTGGGCAGAGAGCCCCGAGGATTTCATTAAATTGCATCGTGATGCATTGGAAAGTAATAGGGTGTCATTTCAACTCCATCACTGGATAGATATAATCTTTGGGTACAAAATGTCTGGCCAGGCCGCAATTGTTGCTAAGAATGTTATGCTTACTCAATCAGAATCCACTATACCAAGATCAACTGGACGTCGTCAGCTCTTTATGCGACCACACCCCATTCGGCACGCTACTGCCAGAATAACACGTAATGGGTCCAATAAATATGCCAAAGTTTCGACTCAAACAAATGAAATGCAGCGAGAGACATCTCTTCTATCCGAAACTGCTTATCTACAAGAACTGGAACAAGCATCTGCATTTTCCGAACATGCTAGGCATTTGAATGCTTGTTACCGTTACCCATTAAGTCAGATGAAAAGAAAGAACATCTCATCTCCGGGAGATTCAACAGCAGGGACGCTTAGCAAAAATAAAAATGATGTATCTTTGATTGACAGAAATTATTGGATGCCGTATAAAATGAATCATATATCCTTTCTTCAACATATGCAAGAGGAAGATGAAGGCTCCTCAGGATATCCAGACTTGCTTCTCTGGAGGCAGAAGTTGTCTTCTTCAAGACTTACCTCTGAAGATATTGCAAGGGACATATTTTCTGTCGGTTGTCTCTTGGCAGAACTTCATCTTTGCAGGCCGCTATTTGATTCAATCTCATTGGAAATATACTTGGAGGATGGAACATTACCGGGATATCTGCAGGAACTACCTCCTCATGTTAGAATACTTGTTGAAGCATGCATCCAAAAGGATTGGATGAGGAGGCCATCAGCCAAAATTCTTCTGGAATCACCTTATTTTCCAAAAACAATCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTTGCTAGAGATGAATCTCGCCTTCGTTTTGCTGCAAATCTTGCAAAGCAGGGAGCTCTCAGGCAAGTGGGTGCATTCGCAACTGAAATGTGTGCTACTTATTGCCTACCACTTATAGTGAATGCTGTGAGTGATACTGAAGCTGAATGGGCATATATATTACTGAAGGAATTGATAAAATGCCTAACAGCACAAGCAGTGAAAACATTAATACTGCCAACCATACAGAAAATTTTACAGAACACAGGTTATTTACATTTAAAGGTTTCCCTTTTACAAGATTCATTTGTACGTGAAATATGGAACCGAGTTGGTAAACAAGCATATCTGGAAACTATTCACCCATTGGTCTTATCAAACTTGTATATATCTCCGGATAAAAATTCAGCTGCATCTGCTTCGGTGCTTCTAATTGGTTCTAGTGAAGAGATTGGTGTACCAATTACCATCCATCAGACTATCTTGCCCCTTGTTCACTGCTTTGGGAAAGGACTGTGTGTAGATGGCATTGATGTGCTGGTCAGAATCGGGGGTATTTTTGGGGAAACCTTTATTATTAAACAGATGCTACCATTACTGAAAAATGTTTTTCGGTCCTTCATTGATGTGTCAAGCATGAATAAGCCTGATCCTGTCCAGAGTTGGAGTGCTTTAGCACTTATTGATTGTATGATGACTATAGATGGCCTTGTAGCTTTCTTGTCAGAAGAAATCATAGTAAAGGAGCTGCTTGAAGACATAAGTTGCATACACATTGGGGTTCTTATGCAGAAACATATGGAATTTGCGGTGCTTCAGGTTGCTGCTACTACTCTCTTTGGAATTTGTCAGCGGATGGGAGCAGATTTGTCGGCATTGCATATTCTTCCAAAACTTAAAGAACTATTTGACGAGCTTGCTTTCTCCCAGGAAATTTCTAAAGGTTCGACTACTGTCGGCAGAAACTTGAAGGTTTCCAAATTAAAAATTGGAGGGGACTTCCAAATTGAGAGTCGTATGGATCTTGTGTTGCTTCTCTATACTTCGTTCGCGTCTCTTCTTGGGATTGAGAAGCTTCGTCAATGTTGTGCTACTTGGTTGCTTCTTGAACAATTACTTCTACGCCGTCATAACTGGAAGTGGGAATATGCAGGAGAGTCATCAAGAAATGGCTCAGAAAATAATATTGCGAGAAGACCTACCATTTACCAGGGACTTACATCTGAATACAATCCTGCAAAGTTGTTGCTTAATGGGGTTGGATGGTCAATTCCACAATCCCAGGGAAGTAGAGGTGCTAAAAATTTGATTCAGAGAAGATCATTCAAACTTCATCAAAGCCCAGTAGTAATACAAGAAGGAATGCCAAACCAAGTGAACCTTGAACCATGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTTCATTTCTTGGGCGGGTGGGGATCCAAAAAGATGAACTTCCTTGGAAGATCAGAGCATCTGTAATCCACTCTATACGTGCACATCATGGAGCAGTGAGGTCTCTGGCTGTACATCAGGATGAATCTACCATTTTTACTGCTGGAATTGGCCAAGGATATAAAGGAACTGTTCTGAAGTGGGAATTGAGCCGAACTAACTGTCTGTCCGGCTATTATGGCCACGAGGAGGTTGTGAACGATATTTGCATTTTATCATCTAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCATATTTGGAATAGTCAGACAGGGAAGCAAATATCTGTATTTGCCGAGTCCGAAACTGAATCTGGCCATCCCACGAGCCATCCAACATCTGTGCCAAAAATTAGCAGTGACCAGGCAAATGTCCTTAATTTAAATACTCTATCAAATGGAATGTTGTCTAGTGCTTTTGATTCAAGCCTTTATACTTGTATGCATCTGTTAGACTCTGCTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTCAGGTTCATTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGGGGGGAATCTAATGAACCTAGTTTTCATTCACTTATTTCTGCCATTTGTTCCTCTGGTTCTAACAAGACTCAAGCAGGTGGAATTTCCAACTCACCATCTTTAATTGCAACTGGACTAAGCTCTGGTCACTGTAAATTGTTTGATGCAAAGAGTGGAAATGTCGTTTCTTCTTGGCGTGCTCATGATGGATATGTGACGAAGTTGGCATCACCTGAAGAACATCTACTTATTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTGAGAATGAATTCACCGTCACAACCCATTATTTTCAGAGGTCATTCAGATGGCATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCAGGAATAGGATTGGGCTTCTTTCCTTGTCTAAATCTGCCACTGAAATGGATGGGCAGCATCACATTATCCCCCAGAAACTATATGTTTCTGATAATGGAATGAGAAGCTTATCAGCATTATCAAGTATCAGTATACTTCCCTTCTCTAGATTGTTTCTTATTGGAACAGAAGATGGTTATTTGAGAATATGTTGTTAA 4899 0.4097 MKGESECFECLQLRINSDFSDQLVFNHAISDYPFPFGSSAILDITGSAEGESSSGQFILQYMSSHENSCFTNYVNGGNEFALSDESETGKAPFRNRTCNHSGKFPCSRTITSLSPNARVDKCSFSVLQDVANDFLSGLTEGHVLESLGLFIEGKASGRDSMNFLRLIGFPSFEEHTFPGTLRHPNIASVLAILKASDHTNIVLPKTPYNLESILHFNPNAIKSDWNRRFLMYQLLSALLYLHGLGVSHGNICPSNIMLTDSLWSWLRLWNEPVLESNLTLQESENVNSKPAKIGCCNGSCHSNDVYADLKLSPQIDWHSSFHQWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVVDFSSKPDDNCDAGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSSMQRLYQWTPDECIPEFYCDGQIFRSIHDGMADLAIPSWAESPEDFIKLHRDALESNRVSFQLHHWIDIIFGYKMSGQAAIVAKNVMLTQSESTIPRSTGRRQLFMRPHPIRHATARITRNGSNKYAKVSTQTNEMQRETSLLSETAYLQELEQASAFSEHARHLNACYRYPLSQMKRKNISSPGDSTAGTLSKNKNDVSLIDRNYWMPYKMNHISFLQHMQEEDEGSSGYPDLLLWRQKLSSSRLTSEDIARDIFSVGCLLAELHLCRPLFDSISLEIYLEDGTLPGYLQELPPHVRILVEACIQKDWMRRPSAKILLESPYFPKTIKSSYLFLAPLQLVARDESRLRFAANLAKQGALRQVGAFATEMCATYCLPLIVNAVSDTEAEWAYILLKELIKCLTAQAVKTLILPTIQKILQNTGYLHLKVSLLQDSFVREIWNRVGKQAYLETIHPLVLSNLYISPDKNSAASASVLLIGSSEEIGVPITIHQTILPLVHCFGKGLCVDGIDVLVRIGGIFGETFIIKQMLPLLKNVFRSFIDVSSMNKPDPVQSWSALALIDCMMTIDGLVAFLSEEIIVKELLEDISCIHIGVLMQKHMEFAVLQVAATTLFGICQRMGADLSALHILPKLKELFDELAFSQEISKGSTTVGRNLKVSKLKIGGDFQIESRMDLVLLLYTSFASLLGIEKLRQCCATWLLLEQLLLRRHNWKWEYAGESSRNGSENNIARRPTIYQGLTSEYNPAKLLLNGVGWSIPQSQGSRGAKNLIQRRSFKLHQSPVVIQEGMPNQVNLEPWFWFPSPATIWDGPSFLGRVGIQKDELPWKIRASVIHSIRAHHGAVRSLAVHQDESTIFTAGIGQGYKGTVLKWELSRTNCLSGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKQISVFAESETESGHPTSHPTSVPKISSDQANVLNLNTLSNGMLSSAFDSSLYTCMHLLDSAETLVVGTGNGSLRFIDVARGQKLHIWRGESNEPSFHSLISAICSSGSNKTQAGGISNSPSLIATGLSSGHCKLFDAKSGNVVSSWRAHDGYVTKLASPEEHLLISSSLDRTLRVWDLRMNSPSQPIIFRGHSDGISSFSIWGQDVISISRNRIGLLSLSKSATEMDGQHHIIPQKLYVSDNGMRSLSALSSISILPFSRLFLIGTEDGYLRICC 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04248 1632 SMART WD40_4 1315 1352 IPR001680 GO:0005515
Vivi1g04248 1632 SMART WD40_4 1496 1534 IPR001680 GO:0005515
Vivi1g04248 1632 SMART WD40_4 1437 1493 IPR001680 GO:0005515
Vivi1g04248 1632 SMART WD40_4 1269 1312 IPR001680 GO:0005515
Vivi1g04248 1632 SMART WD40_4 1397 1434 IPR001680 GO:0005515
Vivi1g04248 1632 SMART WD40_4 1597 1632 IPR001680 GO:0005515
Vivi1g04248 1632 Gene3D Transferase(Phosphotransferase) domain 1 673 773 - -
Vivi1g04248 1632 ProSiteProfiles Trp-Asp (WD) repeats profile. 1503 1543 IPR001680 GO:0005515
Vivi1g04248 1632 ProSiteProfiles BEACH domain profile. 309 579 IPR000409 -
Vivi1g04248 1632 PANTHER GH12955P 4 87 - -
Vivi1g04248 1632 Gene3D - 1248 1471 IPR015943 GO:0005515
Vivi1g04248 1632 MobiDBLite consensus disorder prediction 1363 1382 - -
Vivi1g04248 1632 Gene3D - 1472 1632 IPR015943 GO:0005515
Vivi1g04248 1632 ProSitePatterns Trp-Asp (WD) repeats signature. 1521 1535 IPR019775 -
Vivi1g04248 1632 SUPERFAMILY Protein kinase-like (PK-like) 691 787 IPR011009 -
Vivi1g04248 1632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1503 1536 - -
Vivi1g04248 1632 CDD Beach 323 553 IPR000409 -
Vivi1g04248 1632 Pfam Beige/BEACH domain 323 533 IPR000409 -
Vivi1g04248 1632 SUPERFAMILY Protein kinase-like (PK-like) 178 263 IPR011009 -
Vivi1g04248 1632 Gene3D Transferase(Phosphotransferase) domain 1 173 308 - -
Vivi1g04248 1632 Gene3D BEACH domain 314 579 IPR036372 -
Vivi1g04248 1632 Pfam Protein kinase domain 173 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04248 1632 SUPERFAMILY BEACH domain 310 553 IPR036372 -
Vivi1g04248 1632 Pfam WD domain, G-beta repeat 1498 1534 IPR001680 GO:0005515
Vivi1g04248 1632 Pfam WD domain, G-beta repeat 1317 1352 IPR001680 GO:0005515
Vivi1g04248 1632 SMART Beach_2 321 553 IPR000409 -
Vivi1g04248 1632 SUPERFAMILY WD40 repeat-like 1272 1630 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04248 Vivi-Chr1 90586056 90606505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04248 1269 1535 Miscellaneous Gene Families AT5G08390 22.222 1.09e-07 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Vivi1g04248 Beach 2.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04248 K17601 - gmx:100810047 2747.23