Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04207 ATGGCTGGTAGATTACCTGGTGTTGGATTGTCACCAAGGAAAAAATCAGAACAACATCACAACAGACATGAAAATTATTCTAACTATAGAGACTCTTACCTAAGAAAATCATTGGATTTGGATGCACCATGGACTTCAATTACTACTACCTTAGATGAAAATGCTTTCAAAGCCAAACAAAGACTTGAGAAGAAACTTGGTTCCTTCTTTTCTTCTTCCAGGTCAAGTGAACAAAATCCTAAAAAAGAAGAAGAAAGTAAAAGCAGGTTTCAGAAGAAAGACACAGGATTAGGTCGAAAATTACTAGAGAGTGCATGGTTATTACGTGGAAATAGGTTTAAGAAAGAGAGAAATGTTTGTGCTGTGTGCCTAGAAGATTTCCATCAAAATGAAGAGGTTATGAATCTCTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAAGACATCCTCATTGTCCTTATTGTAGGACTGTTATTGAGCCAAAGGATTAA 507 0.3649 MAGRLPGVGLSPRKKSEQHHNRHENYSNYRDSYLRKSLDLDAPWTSITTTLDENAFKAKQRLEKKLGSFFSSSRSSEQNPKKEEESKSRFQKKDTGLGRKLLESAWLLRGNRFKKERNVCAVCLEDFHQNEEVMNLSCSHKYHSACLLPWLERHPHCPYCRTVIEPKD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04207 168 MobiDBLite consensus disorder prediction 77 93 - -
Vivi1g04207 168 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 55 162 - -
Vivi1g04207 168 SMART ring_2 120 160 IPR001841 -
Vivi1g04207 168 MobiDBLite consensus disorder prediction 13 28 - -
Vivi1g04207 168 Pfam Ring finger domain 119 161 IPR001841 -
Vivi1g04207 168 SUPERFAMILY RING/U-box 119 167 - -
Vivi1g04207 168 MobiDBLite consensus disorder prediction 69 93 - -
Vivi1g04207 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 167 IPR013083 -
Vivi1g04207 168 MobiDBLite consensus disorder prediction 1 28 - -
Vivi1g04207 168 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Vivi1g04207 168 CDD RING-H2_PA-TM-RING 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04207 Vivi-Chr1 89657954 89659188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04207 120 164 C3H Transcription Factor Family AT3G58720 51.111 6.50e-12 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04207 1 89657954 89659188 Vivi1g04207 1 89657954 89659188 ECH