Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04205 ATGGAATCCCCTAATAATCTCACACCAATTCTCATCTTCTCCATTCTCATCCTATCCTCCATCAACCCCTCCCACCAAGCTCTCCCACCTCTCAACCCAAGACTCATCAAAGCCCACACAGCAATCCAAGCATGGAAACAAACCTTCACCTCTGACCCAAAAAACTTCACCTCAAACTGGTATGGCCCAAACGTCTGCAACTACACAGGTATCTACTGTGCACCCTCCCCACAAGATCCCTACATCTACACAGTTGCTGGCATAGACATAAACCATGCAAACATAGCAGGTTCATTACCGGAAGAGCTAGGTCTTCTAAAAGACCTAGCTCTCTTCCACATTAACTCAAACAGCTTCCATGGTTCCCTTCCAAACAGTTTCGACTCTCTCGAATTTCTCCACGAGCTAGACATCAGTAACAACAAATTCTCCGGACCATTCCCGGAAGTTGTTTTATGCATTACTTCATTGAAATTTTTAGACATAAGATTCAATAATTTTCAAGGAAATGTTCCTGAGAAACTCTTTGATCTAAAACTTGATGCAGTTTTCATCAACGATAATAAATTTCAATTCTCTTTGCCGGAGAATTTCGGAAACTCTACAGCTTCTGTTGTAGTTTTCGCGAACAATGACATCAAAGGTTGTATTCCGTCGAGTGTGGTGAAAATGAAGGACACCATTAACGAGATTATAATGGTTAACAGTGGAATGAAAGGCTGTTTACCGGATGAGATTGGTGAGTTGGATAAAGTGACGGTGTTTGATGTTAGTTACAATGAGTTTGTTGGTGAATTGCCGGAGAGTATTGGTGGGATGAAGAGTTTGGAGCAGTTGAATGTGGCGCATAATAGGTTTTCTGGTGTGGTTCCGGAGAGTGTTTGTAGGTTGCCGAGGTTGGAGAATTTTACGTATTCGTTTAACTTTTTCAGTGATGAATCGGAGAGTTGTGTTGAGTTGAAAAGTAAGGATGATAGGTTGAATTGTATTCCTTTTAGGCCGTTGCAAAGGTCGGGTTATGAGTGTGAAGTTTTTTATAAACATCCTGTTCATTGCAGTGGTGTTGGTTGTTCTTTTACATCTCCGTCACCTCCACCTCCATCTCCGCCACCTCCTCCGCCTCCACCTCCTCCACCACCTCCTCCTCCTCCACCACCACCACCTCCACCTCCTCCACCACCATCACCACCTCCTCCTGCGGAAGTTTACTACCATTATCTATGA 1224 0.4363 MESPNNLTPILIFSILILSSINPSHQALPPLNPRLIKAHTAIQAWKQTFTSDPKNFTSNWYGPNVCNYTGIYCAPSPQDPYIYTVAGIDINHANIAGSLPEELGLLKDLALFHINSNSFHGSLPNSFDSLEFLHELDISNNKFSGPFPEVVLCITSLKFLDIRFNNFQGNVPEKLFDLKLDAVFINDNKFQFSLPENFGNSTASVVVFANNDIKGCIPSSVVKMKDTINEIIMVNSGMKGCLPDEIGELDKVTVFDVSYNEFVGELPESIGGMKSLEQLNVAHNRFSGVVPESVCRLPRLENFTYSFNFFSDESESCVELKSKDDRLNCIPFRPLQRSGYECEVFYKHPVHCSGVGCSFTSPSPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPAEVYYHYL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04205 407 Gene3D Ribonuclease Inhibitor 208 329 IPR032675 -
Vivi1g04205 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 399 - -
Vivi1g04205 407 FunFam Leucine-rich repeat extensin-like protein 1 39 200 - -
Vivi1g04205 407 MobiDBLite consensus disorder prediction 361 398 - -
Vivi1g04205 407 SUPERFAMILY L domain-like 41 318 - -
Vivi1g04205 407 PRINTS Proline rich extensin signature 362 383 - -
Vivi1g04205 407 PRINTS Proline rich extensin signature 383 399 - -
Vivi1g04205 407 Gene3D Ribonuclease Inhibitor 37 207 IPR032675 -
Vivi1g04205 407 Pfam Leucine rich repeat N-terminal domain 41 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04205 Vivi-Chr1 89491402 89492761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04205 21 357 Leucine-rich Repeat extension Gene Families AT3G22800 65.689 1.59e-161 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04205 - - tpra:123881562 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04205 1 89491402 89492761 Vivi1g04205 1 89491402 89492761 ECH