Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04200 ATGGCTGTACCAGTGCAACTAAGGATATTGGCGTTAACCGCAACCCCAGGATCAAAGCAGCAGACTGTCCAGGATGTTATTGATAATTTGCATATCTCCAAGCTTGAACATCGCAGTGAAACTGACCACGATGTTATGCCGTATGTTCACGACAGGAAGATAGAGTTGATACAGGTTGCAATGGGCGAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATCGTAACCAAGCTTACTAATATTGGGGCAATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAAGGGCAGATGCAAGATCCTTCACATAACAACTACATAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCACAAACTTCTTTCAAGTCATGGAATAAGACCAGCGTATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTTTGAAAGCAAGGCAACTAATGGACCAAAGCTTATCTCATGGAGCGTCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTTCAGAGAAAGTGTCAGGGACATAATGGCTGCAATTGGAGGTACCGGGGATCAAATTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGAAAAACAACAAAAGGTCAGTCCCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCCATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATCTCACCACTTAGAATGATTCAGCGAATGGGGAGAACAGGAAGAAAACATGATGGCCGAGTTGTAGTTTTGGCTTGTGAAGGGGCAGAGTTGAAAGGCTACTTGAAAAAAAAGGCAAAGGGCAAGACTATAAGCAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACATCTTTAAACCTGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAGAATAATGTGAGAGAAAACCATCTTCAAATTTCTGCATCCAAAGACAAACTCACTCTTGCTGAAACTGATTTACTCGAAAAATATTTTCACTCTACTGGAGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTCTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTGTGGAACATTGATGTTTATAGACATGATGCAACGTTTGCAAGGACTGGCTGCATGTGCAGGAGATAGCAAAAATTCCACCCTTCAGGAAGGAAGGTGTTTAGGAAATAGTAAGCCGCATGTCAGTACTGAACTCGATGAAGCTAAAAATGACAATAGGGATACAACGGGAATAAATATAGATTCTGAAAATCGTCTGGAGGTGGATTCTTGTCATATGGAAATTCAAATCAAAGACTTTGTTGATCTAACTCTACCAGATAATACTTTCAGTGACACGGGCGAGTGTCAAGAGGAAACAGCTGATGGTGATGAGACAATTCCTGAGACTCCCGATGCTAAGAGGATTTTGTCAAATGAAGGAGCTAATGCCACTGAAATAGCAAATTCTGTTGAGAAGCAGACTTCTTCACTGGCTGCAGATGCATGCGATAACGGCATGAGAGATGAAGAGCTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTAGTTCCCGAGTCTCCCATTGAGGAAAGAGGGAAGTCAAGAAACAGGTTTGTCATCCGAGGCTGTATTTCACCTGTTCATCTCCAGGAAGAACAAGATGCTGGCTCTTTGAGTTGCAGGGAAACTGAAAATGTCATAATTGATAGTGGTAATGGTAAAAATGTATGTACATCCCCTGTTAATGATAATGACAATGGTAAAGCTGTATGTACCTCCCCTGTTTATGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTTATGATAGTGACAATGGTAAAAATGTATGTACCTCCCCTGTTAATGAAACCCGAACCCCTTTGCTTGAGCTGAAGAATTGTGCGATTAGAAGAGGACGAGTCTTTGTTTCTCAAATTGAAGAAAGGCATATGCATACTGTTGGTCCAAGCATCAGTGAAGAATCACATCCAAGTTGTGGCGAAATGTCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAATTGAAGATACTGAAAGTAACATGAATCAGAAAAACAATAATATTTTTGATTCAACGGCAAACTTTTCAAAACCAGCTCCTGCCACCAATCCCACACGATATCACGGCCAAGGTATAAAGAAACCAGCTAATGTGAGAGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCCGTATCTAATGATGAAGATGCCGAGGATGACAATTCTGTTGACAGTTTCATAGATGATCAAACTAACCTTACAGCAGCCACTCAGCCTGGAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCATTGCTCAGTCAAACACCGATGAATGGAGGGCCAAGATTTTCCACCACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGCGGTAATTCATCAGTCAAGACAGTGAGTCGTTTCCAGACAGAACATACCAGTCATTCAGCTAATCGAACGTCAGAATCAATAAGTACTGACTGTATGACCTCAGAAGCAGGGCCTTCAACTAGTGTTCCAACTGAGACGGATATAAGAAGCCGTAAAAGAAGATTGACATTTCATAATTCTGGACACTTTCCAAGTGTGAATCTTGAACACCAATTTGCACTTCAATCAAAGAAAGAATCAGTGGATACCAATGCAACCATAGATGTTCTATGTGATGATCAATTCCTTAATACTATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCTATTCTTAAACGGAAATCGGATTCTTCAAATCAGAAGCAAGATGTAAATCCTCAATCTCATGAACCGAACCTTGATGTTATTATGACTCCATCATTTGACCTTGGTATATGA 3171 0.4018 MAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEHRSETDHDVMPYVHDRKIELIQVAMGEDAVEINNKFLEVIRPIVTKLTNIGAIQNRDYRTLSPCVLLEMREKFRQGQMQDPSHNNYIDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKYMSKNEDILKARQLMDQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNFRESVRDIMAAIGGTGDQIRATEFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLKKKAKGKTISKHMRNGGINSFVFHPSPRMIPHIFKPEVQYVELSIEKFIPRQNNVRENHLQISASKDKLTLAETDLLEKYFHSTGENRCRLSLIAFPHSQTFPSRVHKVKHSCGTLMFIDMMQRLQGLAACAGDSKNSTLQEGRCLGNSKPHVSTELDEAKNDNRDTTGINIDSENRLEVDSCHMEIQIKDFVDLTLPDNTFSDTGECQEETADGDETIPETPDAKRILSNEGANATEIANSVEKQTSSLAADACDNGMRDEELSPRLTNLIISGVVPESPIEERGKSRNRFVIRGCISPVHLQEEQDAGSLSCRETENVIIDSGNGKNVCTSPVNDNDNGKAVCTSPVYDSGNGKNVCTSPVYDSDNGKNVCTSPVNETRTPLLELKNCAIRRGRVFVSQIEERHMHTVGPSISEESHPSCGEMSVSIKPARKFKRLRKIEDTESNMNQKNNNIFDSTANFSKPAPATNPTRYHGQGIKKPANVRVRDFIEEEAEVSSDASVSNDEDAEDDNSVDSFIDDQTNLTAATQPGASRMDMMAIYRRSLLSQTPMNGGPRFSTTFSPDNVTMTASIGESGNSSVKTVSRFQTEHTSHSANRTSESISTDCMTSEAGPSTSVPTETDIRSRKRRLTFHNSGHFPSVNLEHQFALQSKKESVDTNATIDVLCDDQFLNTIDLDELEAQATSILKRKSDSSNQKQDVNPQSHEPNLDVIMTPSFDLGI 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04200 1056 MobiDBLite consensus disorder prediction 922 958 - -
Vivi1g04200 1056 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 192 363 IPR001650 -
Vivi1g04200 1056 MobiDBLite consensus disorder prediction 1023 1045 - -
Vivi1g04200 1056 FunFam ATP-dependent RNA helicase, putative 178 350 - -
Vivi1g04200 1056 Coils Coil 1011 1031 - -
Vivi1g04200 1056 CDD FANCM_ID 66 180 IPR039686 GO:0006281|GO:0043138
Vivi1g04200 1056 MobiDBLite consensus disorder prediction 833 851 - -
Vivi1g04200 1056 CDD SF2_C_FANCM_Hef 190 324 - -
Vivi1g04200 1056 MobiDBLite consensus disorder prediction 829 866 - -
Vivi1g04200 1056 Gene3D - 185 350 IPR027417 -
Vivi1g04200 1056 Gene3D - 3 49 IPR027417 -
Vivi1g04200 1056 MobiDBLite consensus disorder prediction 922 955 - -
Vivi1g04200 1056 Pfam Helicase conserved C-terminal domain 199 315 IPR001650 -
Vivi1g04200 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 327 IPR027417 -
Vivi1g04200 1056 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 1 1041 - -
Vivi1g04200 1056 SMART helicmild6 226 316 IPR001650 -
Vivi1g04200 1056 Gene3D hef helicase domain 63 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04200 Vivi-Chr1 89357409 89369216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04200 147 314 Eukaryotic Initiation Factors Gene Family AT3G13920 26.923 2.20e-07 52.8