Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04199 ATGGATTCCAATAACCCTTACGAGATTCTCGACGACGACGATGGATTTGATTGGGAAGCAGCTGCGAGAGAAATTGATGCGGTTTGCGAAATGAGAAGTGACGCGAAAACGAACGGAAGTGAAGCGGAAAAGGTTTGTCAAAAGGGAAAGGGGAAGGGTAAGGGAAAGAGGAAGCAATCGACTCTTGATAATTTTGTTGGAATTGCGAATAAGGAAACTGAAACGATTCGGGTTCCGGAAAATGACTGTGAAGAATCTATCTGTAATCATCCCATTGACACTGAAGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTGCCCAAACTGCACTCTTTCAAAACACTCTGGTCGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCTGCTGTTGTCATGTATAACTACTTTAGATGGTTTCCTGAGGGAAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGCCGGGATACCGCAAGAATGGACAGTCGATATGACTGGTCAGTTAAGTCCTCCTAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGATATTCATTCTGGTAAATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCAGTGCAACTAAGGATATTGGCGTTAACCGCAACCCCAGGATCAAAGCAGCAGACTGTCCAGGATGTTATTGATAATTTGCATATCTCCAAGCTTGAACATCGCAGTGAAACTGACCACGATGTTATGCCGTATGTTCACGACAGGAAGATAGAGTTGATACAGGTTGCAATGGGCGAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATCGTAACCAAGCTTACTAATATTGGGGCAATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAAGGGCAGATGCAAGATCCTTCACATAACAACTACATAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCACAAACTTCTTTCAAGTCATGGAATAAGACCAGCGTATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTTTGAAAGCAAGGCAACTAATGGACCAAAGCTTATCTCATGGAGCGTCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTTCAGAGAAAGTGTCAGGGACATAATGGCTGCAATTGGAGGTACCGGGGATCAAATTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGAAAAACAACAAAAGGTCAGTCCCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCCATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATCTCACCACTTAGAATGATTCAGCGAATGGGGAGAACAGGAAGAAAACATGATGGCCGAGTTGTAGTTTTGGCTTGTGAAGGGGCAGAGTTGAAAGGCTACTTGAAAAAAAAGGCAAAGGGCAAGACTATAAGCAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACATCTTTAAACCTGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAGAATAATGTGAGAGAAAACCATCTTCAAATTTCTGCATCCAAAGACAAACTCACTCTTGCTGAAACTGATTTACTCGAAAAATATTTTCACTCTACTGGAGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTCTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTGTGGAACATTGATGTTTATAGACATGATGCAACGTTTGCAAGGACTGGCTGCATGTGCAGGAGATAGCAAAAATTCCACCCTTCAGGAAGGAAGGTGTTTAGGAAATAGTAAGCCGCATGTCAGTACTGAACTCGATGAAGCTAAAAATGACAATAGGGATACAACGGGAATAAATATAGATTCTGAAAATCGTCTGGAGGTGGATTCTTGTCATATGGAAATTCAAATCAAAGACTTTGTTGATCTAACTCTACCAGATAATACTTTCAGTGACACGGGCGAGTGTCAAGAGGAAACAGCTGATGGTGATGAGACAATTCCTGAGACTCCCGATGCTAAGAGGATTTTGTCAAATGAAGGAGCTAATGCCACTGAAATAGCAAATTCTGTTGAGAAGCAGACTTCTTCACTGGCTGCAGATGCATGCGATAACGGCATGAGAGATGAAGAGCTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTAGTTCCCGAGTCTCCCATTGAGGAAAGAGGGAAGTCAAGAAACAGGTTTGTCATCCGAGGCTGTATTTCACCTGTTCATCTCCAGGAAGAACAAGATGCTGGCTCTTTGAGTTGCAGGGAAACTGAAAATGTCATAATTGATAGTGGTAATGGTAAAAATGTATGTACATCCCCTGTTAATGATAATGACAATGGTAAAGCTGTATGTACCTCCCCTGTTTATGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTTATGATAGTGACAATGGTAAAAATGTATGTACCTCCCCTGTTAATGAAACCCGAACCCCTTTGCTTGAGCTGAAGAATTGTGCGATTAGAAGAGGACGAGTCTTTGTTTCTCAAATTGAAGAAAGGCATATGCATACTGTTGGTCCAAGCATCAGTGAAGAATCACATCCAAGTTGTGGCGAAATGTCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAATTGAAGATACTGAAAGTAACATGAATCAGAAAAACAATAATATTTTTGATTCAACGGCAAACTTTTCAAAACCAGCTCCTGCCACCAATCCCACACGATATCACGGCCAAGGTATAAAGAAACCAGCTAATGTGAGAGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCCGTATCTAATGATGAAGATGCCGAGGATGACAATTCTGTTGACAGTTTCATAGATGATCAAACTAACCTTACAGCAGCCACTCAGCCTGGAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCATTGCTCAGTCAAACACCGATGAATGGAGGGCCAAGATTTTCCACCACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGCGGTAATTCATCAGTCAAGACAGTGAGTCGTTTCCAGACAGAACATACCAGTCATTCAGCTAATCGAACGTCAGAATCAATAAGTACTGACTGTATGACCTCAGAAGCAGGGCCTTCAACTAGTGTTCCAACTGAGACGGATATAAGAAGCCGTAAAAGAAGATTGACATTTCATAATTCTGGACACTTTCCAAGTGTGAATCTTGAACACCAATTTGCACTTCAATCAAAGAAAGAATCAGTGGATACCAATGCAACCATAGATGTTCTATGTGATGATCAATTCCTTAATACTATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCTATTCTTAAACGGAAATCGGATTCTTCAAATCAGAAGCAAGATGTAAATCCTCAATCTCATGAACCGAACCTTGATGTTATTATGACTCCATCATTTGACCTTGGTATATGA 3918 0.4056 MDSNNPYEILDDDDGFDWEAAAREIDAVCEMRSDAKTNGSEAEKVCQKGKGKGKGKRKQSTLDNFVGIANKETETIRVPENDCEESICNHPIDTEAAKTWIYPVNVPLRDYQFHIAQTALFQNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIAGIPQEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEHRSETDHDVMPYVHDRKIELIQVAMGEDAVEINNKFLEVIRPIVTKLTNIGAIQNRDYRTLSPCVLLEMREKFRQGQMQDPSHNNYIDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKYMSKNEDILKARQLMDQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNFRESVRDIMAAIGGTGDQIRATEFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLKKKAKGKTISKHMRNGGINSFVFHPSPRMIPHIFKPEVQYVELSIEKFIPRQNNVRENHLQISASKDKLTLAETDLLEKYFHSTGENRCRLSLIAFPHSQTFPSRVHKVKHSCGTLMFIDMMQRLQGLAACAGDSKNSTLQEGRCLGNSKPHVSTELDEAKNDNRDTTGINIDSENRLEVDSCHMEIQIKDFVDLTLPDNTFSDTGECQEETADGDETIPETPDAKRILSNEGANATEIANSVEKQTSSLAADACDNGMRDEELSPRLTNLIISGVVPESPIEERGKSRNRFVIRGCISPVHLQEEQDAGSLSCRETENVIIDSGNGKNVCTSPVNDNDNGKAVCTSPVYDSGNGKNVCTSPVYDSDNGKNVCTSPVNETRTPLLELKNCAIRRGRVFVSQIEERHMHTVGPSISEESHPSCGEMSVSIKPARKFKRLRKIEDTESNMNQKNNNIFDSTANFSKPAPATNPTRYHGQGIKKPANVRVRDFIEEEAEVSSDASVSNDEDAEDDNSVDSFIDDQTNLTAATQPGASRMDMMAIYRRSLLSQTPMNGGPRFSTTFSPDNVTMTASIGESGNSSVKTVSRFQTEHTSHSANRTSESISTDCMTSEAGPSTSVPTETDIRSRKRRLTFHNSGHFPSVNLEHQFALQSKKESVDTNATIDVLCDDQFLNTIDLDELEAQATSILKRKSDSSNQKQDVNPQSHEPNLDVIMTPSFDLGI 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04199 1305 CDD DEXDc_FANCM 106 287 IPR044749 GO:0005524
Vivi1g04199 1305 Gene3D - 434 599 IPR027417 -
Vivi1g04199 1305 Coils Coil 1260 1280 - -
Vivi1g04199 1305 SMART ultradead3 104 304 IPR014001 -
Vivi1g04199 1305 CDD FANCM_ID 315 429 IPR039686 GO:0006281|GO:0043138
Vivi1g04199 1305 MobiDBLite consensus disorder prediction 1171 1207 - -
Vivi1g04199 1305 MobiDBLite consensus disorder prediction 1082 1100 - -
Vivi1g04199 1305 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 4 1290 - -
Vivi1g04199 1305 Pfam Type III restriction enzyme, res subunit 121 265 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vivi1g04199 1305 MobiDBLite consensus disorder prediction 1272 1294 - -
Vivi1g04199 1305 FunFam ATP-dependent RNA helicase, putative 428 599 - -
Vivi1g04199 1305 MobiDBLite consensus disorder prediction 1171 1204 - -
Vivi1g04199 1305 MobiDBLite consensus disorder prediction 1078 1115 - -
Vivi1g04199 1305 Gene3D - 104 298 IPR027417 -
Vivi1g04199 1305 Pfam Helicase conserved C-terminal domain 448 564 IPR001650 -
Vivi1g04199 1305 SMART helicmild6 475 565 IPR001650 -
Vivi1g04199 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 576 IPR027417 -
Vivi1g04199 1305 MobiDBLite consensus disorder prediction 39 58 - -
Vivi1g04199 1305 FunFam Fanconi anemia, complementation group M 103 298 - -
Vivi1g04199 1305 Gene3D hef helicase domain 312 433 - -
Vivi1g04199 1305 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 283 IPR014001 -
Vivi1g04199 1305 CDD SF2_C_FANCM_Hef 439 573 - -
Vivi1g04199 1305 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 612 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04199 Vivi-Chr1 89355500 89369216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04199 396 563 Eukaryotic Initiation Factors Gene Family AT3G13920 26.923 2.51e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04199 K10896 - gmx:100820078 1555.04