Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04197 ATGCGGCTGATGCAATCATGGTTGCGGTTTGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTTGCCAGTGTTAATGAAATTTCTGCTTTACGAGCAGCATTTCGGCAGGAGGTTACTGTTTGGCAAAAACTTGATCATTCAAATGTCACAAAATTTGTTGGAGCTTCAATGGGCACTTCAAATCTTAAGATTCCTTCAGACGCTGGTGGTCAAAACCCCCTTCCTTCCAAGGCGTGTTGCGTTATTGTTGAGTTTGTTCATGGAGGGACATTAAAACAATTCTTGTTGAAAAATAGGCGGAAGAAACTTGCATACAAGGTTGTGGTTCAGTTGGCTTTGGATCTCGCTAGAGGTCTTAGTTATCTACATTCGAAGAAAATTGTTCACCGCGATGTAAAAACTGAGAATATGTTGTTGGATGAAAATCAAAACTTGAAAATAGCTGATTTTGGAGTTGCTCGAGTTGAAGCGATAAACCCAAGTGAAATGACGGGTGAAACTGGAACCGTTGGATACATGGCGCCAGAGGTTATAAATGGTAAGCCATACAACAGAAGCTGCGACGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGACATGCCTTATCAAAACCTTAGCTTTGCTGACGCGTCATCTGCCGTTGCTAATAAGAATTTACGACCTGACATTCCTCGATGTTGTCCAAGTGAGTTAGCAACTATAATGAAAAGATGCTGGGACAAACATCCAGAAAAGCGTCCACAAATGCAAGAGGTAGCAAGAATGCTGGAAGAACTTGATACAAGCAAAGGAGGTGGAATGATACCAGATGATCAGAGTCCTTTTTGTTTTTGCTTTAGGCCTGCTCGTGGTCCATAA 870 0.4218 MRLMQSWLRFVKVLDWGEDGVASVNEISALRAAFRQEVTVWQKLDHSNVTKFVGASMGTSNLKIPSDAGGQNPLPSKACCVIVEFVHGGTLKQFLLKNRRKKLAYKVVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDENQNLKIADFGVARVEAINPSEMTGETGTVGYMAPEVINGKPYNRSCDVYSFGICLWEIYCCDMPYQNLSFADASSAVANKNLRPDIPRCCPSELATIMKRCWDKHPEKRPQMQEVARMLEELDTSKGGGMIPDDQSPFCFCFRPARGP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04197 289 SUPERFAMILY Protein kinase-like (PK-like) 29 260 IPR011009 -
Vivi1g04197 289 CDD STKc_MAP3K-like 11 260 - -
Vivi1g04197 289 PRINTS Tyrosine kinase catalytic domain signature 83 96 IPR001245 GO:0004672|GO:0006468
Vivi1g04197 289 PRINTS Tyrosine kinase catalytic domain signature 121 139 IPR001245 GO:0004672|GO:0006468
Vivi1g04197 289 PRINTS Tyrosine kinase catalytic domain signature 187 209 IPR001245 GO:0004672|GO:0006468
Vivi1g04197 289 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672|GO:0006468
Vivi1g04197 289 Pfam Protein tyrosine and serine/threonine kinase 31 260 IPR001245 GO:0004672|GO:0006468
Vivi1g04197 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vivi1g04197 289 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 263 - -
Vivi1g04197 289 PIRSF ILK 11 269 - -
Vivi1g04197 289 Gene3D Transferase(Phosphotransferase) domain 1 10 267 - -
Vivi1g04197 289 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04197 289 SMART serkin_6 8 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04197 Vivi-Chr1 89328162 89331432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04197 11 289 MAP Kinase Kinase Kinase AT3G22750 77.061 3.60e-169 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi1g04197 PK_Tyr_Ser-Thr 1.8e-56 CL0016