Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04192 ATGTTCTCTTTCCCTAATAATTTCCCTTCATCTTCTTCTTCTTCTTACCCTAATAATAATAATAATACCCTTTCTTTTCTTATAGACAACAACCCTCAAAATAATGATTTTCCTTCTCTTCTTGATGATCCACTTTCTTCTCTTCCTTTCACTACTTCAACACATCATCATCATGATGTTGTTCCTTTGTTCCATGATCATGAAACAACTATTGCTTCTAACTTGGCTGTTTCTGATTATCACAACAATAACGGTTCGATGTTTGAACCTCCCGATTCTTCGAACTTTGGAGGGTTTTCTAATTTTCTTGTGACGCAGAAACAACCGGTGATTGTTGGGAAGAAAGATAGGCACAGTAAGATTCATACATCTCAGGGTTTGAGAGATAGAAGGGTGAGATTGTCAAGTGAAATTGCTAGGAAGTTCTTTGATCTTCAAGATATGTTGGAATTTGACAAACCAAGTAACACTCTTGAGTGGCTTTTCAATAAATCGGACACCGCAATCAAAGAGCTAGCTCGAACTAAAAACGCGTGTTACAACAACAACGACAGCAACAACAACAACAATAGCGCGTTTTTTGATTCGAATAGCAACAAATCGTTCTCCGGCGGTGGTGGTGGTGGTGACGGTGGTTGTACAAAAGGGAGAAAATTGAAATGGACTCAAAAAGAAGAAACAAAGAAAGAGTTAAGAGAGCGAGCACGAGCCCGAGCAAGAGAAAGAACCTGTTACAAGATGTGCAGCAGCGGAAGAATGCAAGAAGAAATTCGCTACTCTTCTGCAGCAGATTCAACTGCAAATGCTCAAATGCTGCAACAATTGATGTCGTCAACATCATCGCCGGTCGATAGTACTACTGAAACGGAGGCTTACGCGAGATGGCGTCATCTTCTTCAGCTTCAAACCTATAACAATCCTACCTACAGTCAAAATCATCATAACCTAGTGGATAGTGAAATACCTAGAGATCATGGTGGATTCAATTTGATTGAAGAATCTATCATGATAAAAAGGAACATGATGTCGTCGTCTTCGTCTTCTTCGTCTCATTATCACCATCATCAACAAAACCTAATTCCTAATATCCCTAAGGAATTACCGAGTTTCAACAACAATATTAATGATTATAACTCTTTATTCCCTTATTCAACTTCAAATTGGGAGAATAATAATGGAGGATGCTCCAACTTTTGTGGAATAGCCACCATGAATCTATCAACATGCTTCATGAATCAGTGA 1242 0.3865 MFSFPNNFPSSSSSSYPNNNNNTLSFLIDNNPQNNDFPSLLDDPLSSLPFTTSTHHHHDVVPLFHDHETTIASNLAVSDYHNNNGSMFEPPDSSNFGGFSNFLVTQKQPVIVGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFNKSDTAIKELARTKNACYNNNDSNNNNNSAFFDSNSNKSFSGGGGGGDGGCTKGRKLKWTQKEETKKELRERARARARERTCYKMCSSGRMQEEIRYSSAADSTANAQMLQQLMSSTSSPVDSTTETEAYARWRHLLQLQTYNNPTYSQNHHNLVDSEIPRDHGGFNLIEESIMIKRNMMSSSSSSSSHYHHHQQNLIPNIPKELPSFNNNINDYNSLFPYSTSNWENNNGGCSNFCGIATMNLSTCFMNQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04192 413 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Vivi1g04192 413 ProSiteProfiles R domain profile. 229 246 IPR017888 -
Vivi1g04192 413 Pfam TCP family transcription factor 113 249 IPR017887 -
Vivi1g04192 413 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 89 359 IPR005333 GO:0003700
Vivi1g04192 413 MobiDBLite consensus disorder prediction 217 234 - -
Vivi1g04192 413 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04192 Vivi-Chr1 89158925 89161039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04192 112 248 TCP Transcription Factor Family AT1G67260 47.712 1.57e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi1g04192 TCP 9.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04192 - - psat:127091957 629.017