Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04178 ATGCATACCAAGGACGTTTGTTCTTCCTCCTCCCAAACCGGATTCGGCGACGGCCTTGAGCCTGCCGGCAACATGCTCGCCAACGCCGACGCATTTGCTTCGTCTGGAACAGAGTCCGACTCTTGCGTGATACAGGAGCGTCAAGATTTAGTGAATTGTTTGAGTATGTGTCTCAGTAGCCTCGTGGAGACTTCCAATGAGGTTGAAACTATGAAGGAAAAGATCGGAGAGCTCCGTGGCGTGGTGAAAGAGATGCAGAAGAATCTGAACGTCCTACTTCGGGCTTCACTGGAGAACCGATTTGGCGGTTGTGGTTCCTCCTTCCAGACACTGTTGAACATTTTCAATCGCTTGAATGTTGGCGATGGAAAAGAAAACTGTGCTGATTGGAATAACAATAAGACGGAGCTGTGCAATAAATGGCAGAAAACTGGAACATGCCATTACGGAAACAACTGCCAATACGCTCACGGCATTGGGGAGCTTCGTCCAGTGATCCGCCAGCCATGCAGGATGGTCCTTGCTGGAATTGTCTGTTCGTTTGGTGATAGATGCCATTTTCGTCATGAGCTTACTGAAGAGGAAAAAGCTAGGCCTATATCATCAATCAAGTTGGAAAGATAA 624 0.4808 MHTKDVCSSSSQTGFGDGLEPAGNMLANADAFASSGTESDSCVIQERQDLVNCLSMCLSSLVETSNEVETMKEKIGELRGVVKEMQKNLNVLLRASLENRFGGCGSSFQTLLNIFNRLNVGDGKENCADWNNNKTELCNKWQKTGTCHYGNNCQYAHGIGELRPVIRQPCRMVLAGIVCSFGDRCHFRHELTEEEKARPISSIKLER 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04178 207 PANTHER CCCH ZINC FINGER/TIS11-RELATED 133 199 IPR045877 GO:0003729
Vivi1g04178 207 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Vivi1g04178 207 SMART c3hfinal6 166 191 IPR000571 GO:0046872
Vivi1g04178 207 ProSiteProfiles Zinc finger C3H1-type profile. 164 192 IPR000571 GO:0046872
Vivi1g04178 207 SUPERFAMILY CCCH zinc finger 131 164 IPR036855 GO:0046872
Vivi1g04178 207 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Vivi1g04178 207 Coils Coil 68 88 - -
Vivi1g04178 207 SUPERFAMILY CCCH zinc finger 168 194 IPR036855 GO:0046872
Vivi1g04178 207 Gene3D - 127 165 - -
Vivi1g04178 207 FunFam zinc finger CCCH domain-containing protein 15-like 128 165 - -
Vivi1g04178 207 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 158 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04178 Vivi-Chr1 88618820 88619493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04178 134 205 C3H Transcription Factor Family AT1G68200 63.855 6.72e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g04178 zf-CCCH 3.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04178 K18753 - vvo:131636869 319.316