Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04158 ATGGAACCGGGCACCACCAGAATAGCTAGCCCGTCTGGGGCTGTGGTTAAGAATAGAACCTCTTCGGGGTGTTTGATTGTTAGAAAGAAAGGAGATGGTTTGGGTGGTGGTTCTTCGGGTTCGCGGAAACAGTATGAATCGAAGAAAGTGAGGAAAAAGGTTAAGGCGGAATCAAGTGATTCAGAATCAAGTGAGGAGTTACTTATGCCGCCTGCCAGGAGGCCCGGTCCTGAGACAATCCGAGTATGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGTAATGTTGTTAGCGGGGAACTTAATAGGAAGAGGGAGAGAATGGAGCAAATTAGGCGTAACGGTGATGATATGGTTGAGGGGAATGGGTTGGAGAGGAGGGACAAGAAAGTTAAGTTGGAAGTGTTTGATTTTGATGAATATGATGGAGTGGGTGCGGAAAGGATGAGAAGGAGGCAATTTGATGGTGACGGGGTTAGTTTAGGTGGAGGAAGGTTTATGGGAACAATGCAGTCTGGTAGAGGTAGCATTGATAGGGAATTTGAAAGTGGTTCAAACAGACGCATTGTGGATAAGAGAAAAAGTGCATATCATGACAGAGCAAGTGGCTCGTATCTTGGAGATAGTGTTGACCATAGTAGGATAAAGGTGAAAAGGGAAAGAACTCAGCATCCTCCGCCCTTGTTGAAGGAGAAGTTTAACTCTGATGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGACGAGTGGGTCAGTAGAACGCTATGATCATCGGAAACCAGTAGAAAGCAGACATAGTGGAAGGGCTGAGGGCACTTCTAAGAGGAATGTTCCAGTACAACCTTCATCACGCTTAGAAACAAAATCTGCCGAAAAACAGGGCTTACTTGTTAAGCCGGAGAAGAAACAGATAAAAAAATCACTCTCAAGCAAGGAGGACAGTAAGGGCGACGAGCAGGATTCCGAAAACAATGACACATCAATGAATCTGGAAGTAAAAAATATTAAAGCTCACACATCTTCAAAAAAGATTACTTCTGAAAATGAACAGACTCCTGTACATGACAAGCTCCCAACAACAAAATCAAGTGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTAAGAGAACAAATACGGGAAATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGAAGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCCGGGGGAACAGCTTATTGGTCCATCATCAAGGCCTACGATGCACTTCAAAAGCAATTGATTGAGGATGACCAAGAGGCCAAGGCCAAAGGGGCGAGTTCTTCTTTTGCTCCTATCGCTGATGATGTGCTCAATCAATTGACAAGGAAAACTAGGAAGAAGATGGAGAAGGATTTAAAGATGAAGAAGAAGAAGCAAAGAGATGACGACAATGATAGTGGAAAAGAACGGCAGATTAAAAGAACTGCTGGGAAAAAGCATCATATGAATGACAATGATAGTGATAGCCATGAACAGAAGTTAAGCTCCTTTATCAAGCAAGGAGGTAAATCAGTGAAAACTAAATTGCCTGAAAATTCTGTTACGGGCGGTAGCTCTAAAAGCCAGAATGCTACAACTGATAAATCATTTTCTGAAAGTGATCCCAAGCTCCTACACGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTCTATTAGTTCGTAGTTCTAACAAGGCATTGAATTCCGAATCTGATGACTTTGTTCCATATACGGGAAAGCGAACAGTGCTTTCCTGGTTAGTTGACTCGGGGGTAGTACAGGTAAGTCAAAAGGTTCAGTATCGCAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTCGAGCTTCATGCAGGAAGCAAATTGCCACAACCATATCAAAACATATATTTAGATTCTGGAGTTTCTCTTCTACAATGCCAGATAGATGCGTGGGAAAAACAAGAGAATTCTGGGAAAATCAGTTTCCATTCAGTAGATGTTGATGGTAATGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGTGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTTCCTCCTGGGGATTGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGATTAGCCAGTGGAACTATTAACAAAGAAGATGATGCAACTGTATATGCCCTACACTCTTGTGATTTGTGCGAGAAAAAATATCATGACTGCTGTACTAAGGATATGAGTGCCCTGCTTGCCAACTCCAATATGTCAGGGCATTCCTTTTGTGGAAAAAGTTGCAAAGAGCTTTTTGAGCACTTGAAGAAATACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTGTCTTGTTCGTAGAACAGACGATGATTCCGAGGCAGCTAGTAGGGGAGTCACCCAAAGGGTGGAGTGCAACTCCAAGCTGGCTGTTGCACTGACTGTTATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCATAATAGTTTATATAACAGCGGGTCAAATTTCAGTCGGTTGAATTACACTGGCTTTTATACTGCTATTTTGGAGCGGGGCGATGAAATAATATCTGCAGCATCTATCAGATTCCATGGGACTAAGTTAGCAGAAATGCCATTCATTGGAACTCGCCATATATATAGACATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACATGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTCATTCCTGCAATTTCTGAACTTGTTCATACATGGACAACAGTGTTTGGCTTCACACATCTTGAAGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTGTTCCCTGGTATTGATATGTTACAGAAGGTTCTAGTGGAGCAAGGAAAACTTGATGATGCCGAGCAATTTGAGAATGGTGGCGTGGTTTCTGTTAATCCCACTGTGGTCAATAGGTTAGATACGGATTCTTTGGCTTTGCAAGATCCCCATGAAAGTGAGGATGCTAGCTCCAATCCTGCCAATAAGATTAACACTGAATGCAGTGATGCTTCCCAAGATATAAGCAGTCAAGGTTTGACCGGCAGGACTGTATGCTCCAAATCTCATTCTGAAGAAAGATTATCTGATTCTGTTTCAGAAAATTGTGCTTCTCCTTCTAATTCTAGTCACGGCGTACTCGAAAAGAAAAATAAAATATCGACATCTTTCATCGGATCTACAAATGGCAAGTCTACAAATGGTCTTCCATCGGATCACTCTGATTGTCATGAACTTCCAGCTTTGAGTCAAGCAACTGCATGTTCTGACCTAGGTACTGTAAAAAATCTGGTTGAACCTGTTTCTGACGGGAAACCCCATGCTTTAATCGATATGAATTGTGGTTTGCCGGGGCTTGCCCGAAATCCTGTGTTGGATTCTCAAGTGGTGGATAATGCTTTGTCTTTTAAAGAGTTTGATATGAATGCTGCCCAAGTTGAGGTTCTTGAAGCTGGTCTTTTAGTCAATCCATCTCAAGGGAACAATATCAAAGAGAAAAATGAAAATGTAGATTACTCTGGTTCTGTTCTTAATCATGCTTCCACTGATATGGATAGTGATTCACCAGAACTTGATCAAAATTCTGTGTTGGATTCTCGAGTGGCGGAAAATGCTTTGTCTATTAAAGAGTTTGATATGAATGATGCCCCTGTGGAGGTTCTTGAAGCTGGTTCTTTAGTGAATTCATCTGAAGGGAACAATACCAAAGGGAATAATGAAAATGTTGATGACTCTGGTTCTGTTCTTAATCATACTTTCACTGATATGAAAAGTGGTTCACCAGAACTTGACCGAAATCCCGTGTTGGATTCTCGAGTGGCGGACAATTCTATGTCTTTTAAAGAGGTTGATATGAATGATGCCCTTGTTGAGGTTCTTGAAGCTGGTTCGTTAGTGAATTCATCTCAGGGGAACAATACCAAAGAGAATAATACAAGTGTAGATGTCTCTGATTCTGTTCTTAATCACACTTTCACTGATATGAATAGTGATTCTCCGGGGCTTGACGAAAATCTCATGTTGGATTCTCGAGCGGCAGACAATTCTCTGTCTTTTAAAGAGGTTGATGTGAATGATGCCCATGTCGGGGTTCTGGAAGCTGGTTCTTTAGTGAATTCATCTCAAGGGAACAATACCAACGAGGATAATAAAAATGTAGATGTCTTTGATTCTGCTCTTAATCACGCTTTCACTGATATGAATAGTGATTCTCCAGGGCTTGACCAAAATCCTGTATTGGATTCTCAAGTGGTGGATAATTCTTTGTCTGTTAAAGAGATTGATATGAATGATGCCCGTGTCGAGGTTCCTGAAGCTGGTCCTTTAGTGAATTCAACTCAGGGGAACAATACCGAAGAGAATAATGAAAATGTAGATGTCTCTGGCGCTGTTCTTAATCATGCCGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTGATTAGTGAAATTGCATACGAGGGCGAAAAGAAATCACATTTAGACACAGAAGTTGCTTCAAATGAAATGCACTTTGATGAAACTGGCCTAAATGCTTCTGGTGGTAGTACTGAGACGGATCGAGCATTGATGAATGGTTGA 4764 0.4181 MEPGTTRIASPSGAVVKNRTSSGCLIVRKKGDGLGGGSSGSRKQYESKKVRKKVKAESSDSESSEELLMPPARRPGPETIRVCNSLSALERGGNVVSGELNRKRERMEQIRRNGDDMVEGNGLERRDKKVKLEVFDFDEYDGVGAERMRRRQFDGDGVSLGGGRFMGTMQSGRGSIDREFESGSNRRIVDKRKSAYHDRASGSYLGDSVDHSRIKVKRERTQHPPPLLKEKFNSDESIRVQGKNGVLKVMVNKKKTSGSVERYDHRKPVESRHSGRAEGTSKRNVPVQPSSRLETKSAEKQGLLVKPEKKQIKKSLSSKEDSKGDEQDSENNDTSMNLEVKNIKAHTSSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIEDDQEAKAKGASSSFAPIADDVLNQLTRKTRKKMEKDLKMKKKKQRDDDNDSGKERQIKRTAGKKHHMNDNDSDSHEQKLSSFIKQGGKSVKTKLPENSVTGGSSKSQNATTDKSFSESDPKLLHGRKSRKHGRCTLLVRSSNKALNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENSGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLASGTINKEDDATVYALHSCDLCEKKYHDCCTKDMSALLANSNMSGHSFCGKSCKELFEHLKKYLGTKHELDAGFTWCLVRRTDDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIEHALCSLKVEKLVIPAISELVHTWTTVFGFTHLEESLRQEMRSLNMLVFPGIDMLQKVLVEQGKLDDAEQFENGGVVSVNPTVVNRLDTDSLALQDPHESEDASSNPANKINTECSDASQDISSQGLTGRTVCSKSHSEERLSDSVSENCASPSNSSHGVLEKKNKISTSFIGSTNGKSTNGLPSDHSDCHELPALSQATACSDLGTVKNLVEPVSDGKPHALIDMNCGLPGLARNPVLDSQVVDNALSFKEFDMNAAQVEVLEAGLLVNPSQGNNIKEKNENVDYSGSVLNHASTDMDSDSPELDQNSVLDSRVAENALSIKEFDMNDAPVEVLEAGSLVNSSEGNNTKGNNENVDDSGSVLNHTFTDMKSGSPELDRNPVLDSRVADNSMSFKEVDMNDALVEVLEAGSLVNSSQGNNTKENNTSVDVSDSVLNHTFTDMNSDSPGLDENLMLDSRAADNSLSFKEVDVNDAHVGVLEAGSLVNSSQGNNTNEDNKNVDVFDSALNHAFTDMNSDSPGLDQNPVLDSQVVDNSLSVKEIDMNDARVEVPEAGPLVNSTQGNNTEENNENVDVSGAVLNHAGESSLQVRSDLISEIAYEGEKKSHLDTEVASNEMHFDETGLNASGGSTETDRALMNG 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 1046 1081 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 1290 1328 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 352 366 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 210 237 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 1 78 - -
Vivi1g04158 1587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 808 IPR013083 -
Vivi1g04158 1587 ProSiteProfiles Zinc finger PHD-type profile. 704 749 IPR019787 -
Vivi1g04158 1587 SMART PHD_3 706 747 IPR001965 -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 1043 1139 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 179 198 - -
Vivi1g04158 1587 Pfam PHD-finger 707 749 IPR019787 -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 519 556 - -
Vivi1g04158 1587 PANTHER PHD FINGER PROTEIN 12 362 1112 IPR042163 GO:0003714|GO:0045892
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 469 570 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 255 279 - -
Vivi1g04158 1587 SUPERFAMILY FYVE/PHD zinc finger 693 749 IPR011011 -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 299 330 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 1567 1587 - -
Vivi1g04158 1587 Pfam Tify domain binding domain 629 679 IPR032308 -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 153 385 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 281 297 - -
Vivi1g04158 1587 ProSitePatterns Zinc finger PHD-type signature. 707 746 IPR019786 -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 367 385 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 1093 1134 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 1290 1321 - -
Vivi1g04158 1587 MobiDBLite consensus disorder prediction 479 518 - -
Vivi1g04158 1587 CDD PHD2_CHD_II 707 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04158 Vivi-Chr1 88302549 88310802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04158 1 1008 PHD Transcription Factor Family AT4G14920 49.709 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1g04158 TDBD 2.8e-21 No_clan