Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04155 ATGAATGTTGCAGCAAGCTTTGAGGCAGAAGATTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCTAAGACAGTATATAGAGCATTTGATGAGTATGATGGAATAGAAGTGGCATGGAATCAAGTAAAGCTTTATGACTTTTTGAAAAATCCTCAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCATAAGAACATCATGAAGTTTTACACTTCTTGGGTTGATACTACTAATAGACACATTAATTTTGTTACTGAGATGTTCACCTCCGGTACTCTAAGACAGTACAGACTTAAACATAAAAGAGTTAACATAAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCAGGACCCACCTGTGATCCATAGAGATCTCAAATGCGATAACATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATCGGTGATCTTGGCCTCGCTGCAATTCTCCGCAGATCGAATGCTGTTCACTGTGTTGGAACACCCGAGTTTATGGCTCCGGAAGTGTATGAAGAACATTACAACGAATTGGTTGACATATACGCTTTCGGAATGTGTATATTGGAGATGGTTACCTTTGAATATCCTTATAGCGAATGTAACCATCCTGCTCAAATTTACAAAAAGGTTGTCTCGGGGAAAATGCCAGAATCATTTTACAAAATAAATGATCAAGAGGTTAAGCAGTTTGTAGAGAAATGCTTGGCAACTGTTTCCCTTAGGCTTTCAGCTAGGGAACTCTTAGATGACCCTTTTCTCCAAATTGATGATTATGGATCTGACTTGAAAGAAGTTCAGTATCAAAGAGGTTGCTATGAAGAAACACCAACGATTCGACAAACTGTGAATGGAAGTTATAGCAATAACTTAATGAGTTTGTACACTGATAATTCTGGTGGTTATCAAAATGATTTTGATCTCTTTGATTGTGAAGAGGATGATAATTTGGATAAAGTTGATACCTCGATCAAAGGTAGGAGAAGAGATGATGGCGTCTTTCTTAGAATCAGAATACCAGATAAAGAAGGTCGAGTTCGAAACATCTACTTCCCGTTCGACACGGAGACTGATACTGCATTGAGTGTTGCGTATGAAATGGTAGCCGAGCTTGACATAACTGACCAAAATTTAACAAAATTAGCGAATATGATAGATAATGAAATTGCAAATTTGGTACCGGGATGGAAAATTGGACCAAGAATAGATGAAGTTTCAGAAGCTTCAAGTGCAAGTTTCTGTCTCAACTGTGCTGCAAACAATACCTTAGTTGATTATGTATCATCGAATAATCCATGTGCCAAGAATCTTCAATTTTTCCATTGTTCTAAAAACGGATGTGCCGCGGTTCACGGCCGATTCGAGGAGATTACGTATCAATACGAAGGGTCTGCCAACACTGCTACAGAAGCTGAACCACCAAGTCAATCCAATGGCATTCATTATGCTGATATCTGGGGTCAGCGAGACGAACAACAGTCAAATCATGAAGGATTGAAAGACATTCATTGCGACGATTCTCATGAGAAATCTAAACTATCACTCATAAAAGAGGATGAAGAGGAGAATAATGTTGATGCAGATGACCAAATTTATCTTAATACCAAAAAGCCTCCTTCTAGCCCTGCAGCTTCAGAATGTTCATTATTCTTGGACTACGAAAACGATATAAGGCATGAACTTCGATGGCTCAAAGCAAAGTACCAAATGCATTTAAGAGATCTTAGAGGCCATCAACTAGGTAGTAGTACTAAACCAAAATCTACTTGCACATCTCCTGAAACTATAAAACTAGAGCATGGAAAAAATGGATTTCTGAGACCACCAGCTAAATTGCAAAACAATAACTCATTATCGATAGACGTTGATGCTGCAAAGTGCAACACTCTGAATGACCAAATTATTCCAAGTATTGCTTGTGATACAAGTCAGCTTAACAATTCTCAACAAATGGTCACGGCCAAGGATTTCTTCGCAGGAGCCTTGCTTCCAAACTCGCTTCAAAGGGCAACCTCGCTTCCAGTCGATGCAGTTGATGTCTAG 2124 0.3889 MNVAASFEAEDSEFIEVDPTGRYGRYNEILGKGASKTVYRAFDEYDGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTTNRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSQDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRRSNAVHCVGTPEFMAPEVYEEHYNELVDIYAFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKMPESFYKINDQEVKQFVEKCLATVSLRLSARELLDDPFLQIDDYGSDLKEVQYQRGCYEETPTIRQTVNGSYSNNLMSLYTDNSGGYQNDFDLFDCEEDDNLDKVDTSIKGRRRDDGVFLRIRIPDKEGRVRNIYFPFDTETDTALSVAYEMVAELDITDQNLTKLANMIDNEIANLVPGWKIGPRIDEVSEASSASFCLNCAANNTLVDYVSSNNPCAKNLQFFHCSKNGCAAVHGRFEEITYQYEGSANTATEAEPPSQSNGIHYADIWGQRDEQQSNHEGLKDIHCDDSHEKSKLSLIKEDEEENNVDADDQIYLNTKKPPSSPAASECSLFLDYENDIRHELRWLKAKYQMHLRDLRGHQLGSSTKPKSTCTSPETIKLEHGKNGFLRPPAKLQNNNSLSIDVDAAKCNTLNDQIIPSIACDTSQLNNSQQMVTAKDFFAGALLPNSLQRATSLPVDAVDV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04155 707 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04155 707 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vivi1g04155 707 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vivi1g04155 707 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vivi1g04155 707 CDD STKc_WNK 22 281 - -
Vivi1g04155 707 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04155 707 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04155 707 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Vivi1g04155 707 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 613 - -
Vivi1g04155 707 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vivi1g04155 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04155 Vivi-Chr1 88272551 88276143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04155 1 628 MAP Kinase Kinase Kinase AT3G22420 50.449 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi1g04155 Pkinase 3.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04155 K08867 - gmx:100804179 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04155 1 88272551 88276143 Vivi1g04155 1 88272551 88276143 ECH