Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04118 ATGTGCGCCCTGCCCGAAATACCCCTCCCATCTGTCATCCATTCAAATCCAAATTTCCATTTCTCGCCATTTCCTATCTCTTCTCTCTCTTTCCTTTCCGTTAACCAGAGCGCCAACAACACATACTGTGAAAACCCGCCTCTTCTTCTCTCATCCATGGAGTTTCAGAGACGCCAAAGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGGAAGCTAGACGAAGAATCACAGGACGAGCCACAGATCTCGGCGACGCCGCCCACCGCCGACGAGCGTGCGGCAGTTTTAACTGAAGTGGAGAATCAGGTCAACATCCTCGAGTCGAGTTTCACGTGGAAGGAGTCCGACAGAGCAGCGGCGAAGCGTGCCACTCATGCGCTCGCTGATCTCGCGAAGAATGAGGAAGTGGTGAATGTTATTGTGGAAGGAGGTGCTATTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTGTGGAGGATTGCGATCAGAAGGTGTTGCCGTTTGAACATGAAGTTGAGAAAGGAAGTGCTTTCGCTCTAGGACTTCTTGCGGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACTCACCTTGTTGATCTTTTGAAGAGGCATAACAATGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTTGCACACGAGAATAGCAACATTAAAACCCGCGTCAGGATGGAAGGTGGAATTCCTCCACTTATTCATTTGCTTGAGTCTGCCGACACAAAGGTGCAAAGAGCTGCTGCTGGTGCACTGAGAACCCTAGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATGCTCTTCCGACTCTGATTCTAATGTTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTTCACTCTTCTCCTAATATAAAGAAAGAGGTTCTTTTTGCTGGTGCTCTACAACCAGTTATTGGATTACTTGGCTCCTGCTGCTCTGAGAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTCGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTTCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAGTGGTGGCTTAGTGCCACTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTATCTGATTTCATAAGGGTAGGTGGTGTTCAAAGACTACAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTTCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGCTGAGCCATCTGTTATATCTCATGCGAGTTTCAGAAAGAGGTTTTCAAAGGCGAATTGCTTTAGTTCTTGCGCATCTATGTTCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAATTGCTTATCGGGCTCCTTTGCTCATCTAGCACCAAGCAGCAGCTTGATAGTGCCGTGGCATTATGCAAGTTGGCCAATAAAGCTTCAACTCTGTCTCCTGTAGACGCTGCTCCTCCTTCTCCAACACCACAGGTCTACTTAGGAGAGAAGTTTGTAAACAATGCTACGCTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGTTTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCGTTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATCCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTAAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTAGAGAACGTGTCGAATATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATTCTTTTTATCTTGAAGCACTTTGATAAGTTGAGCGCAAGGCCAGGGCACTCTCTTTTGATTCAGCGTACAATTCCAGAGATCCGCAATTACTTTGTTAACGCTCTTACAAATGCCAACTCCCATAGACAGTAA 2271 0.4461 MCALPEIPLPSVIHSNPNFHFSPFPISSLSFLSVNQSANNTYCENPPLLLSSMEFQRRQSHCLSERKGQKRKLDEESQDEPQISATPPTADERAAVLTEVENQVNILESSFTWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPVEDCDQKVLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTRVRMEGGIPPLIHLLESADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLGSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSSDVQLREMSAFALGRLAQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVSKTLKRLEEKIHGRVLSHLLYLMRVSERGFQRRIALVLAHLCSADDQRRIFIEHHGLELLIGLLCSSSTKQQLDSAVALCKLANKASTLSPVDAAPPSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTPDIAQDLLRAADQYLLEGLKRLCEYTIAQDILLENVSNMYELSEAFNAISLRHACILFILKHFDKLSARPGHSLLIQRTIPEIRNYFVNALTNANSHRQ 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04118 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Vivi1g04118 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 248 IPR000225 GO:0005515
Vivi1g04118 756 Pfam BTB/POZ domain 585 686 IPR000210 GO:0005515
Vivi1g04118 756 Gene3D - 467 573 IPR011989 -
Vivi1g04118 756 Gene3D - 219 325 IPR011989 -
Vivi1g04118 756 SUPERFAMILY POZ domain 583 685 IPR011333 -
Vivi1g04118 756 ProSiteProfiles BTB domain profile. 591 658 IPR000210 GO:0005515
Vivi1g04118 756 FunFam Armadillo/beta-catenin repeat family protein 582 726 - -
Vivi1g04118 756 Gene3D - 88 218 IPR011989 -
Vivi1g04118 756 MobiDBLite consensus disorder prediction 60 90 - -
Vivi1g04118 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 199 IPR000225 GO:0005515
Vivi1g04118 756 Gene3D - 326 466 IPR011989 -
Vivi1g04118 756 SUPERFAMILY ARM repeat 489 560 IPR016024 -
Vivi1g04118 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 283 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 321 361 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 519 559 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 187 235 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 279 319 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 363 403 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 237 277 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 134 186 IPR000225 GO:0005515
Vivi1g04118 756 SMART arm_5 404 444 IPR000225 GO:0005515
Vivi1g04118 756 CDD BTB_POZ_ARIA_plant 578 693 - -
Vivi1g04118 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 332 IPR000225 GO:0005515
Vivi1g04118 756 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 53 752 IPR044282 -
Vivi1g04118 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 416 IPR000225 GO:0005515
Vivi1g04118 756 SUPERFAMILY ARM repeat 107 463 IPR016024 -
Vivi1g04118 756 Gene3D Potassium Channel Kv1.1; Chain A 574 720 IPR011333 -
Vivi1g04118 756 MobiDBLite consensus disorder prediction 60 79 - -
Vivi1g04118 756 Pfam Armadillo/beta-catenin-like repeat 244 276 IPR000225 GO:0005515
Vivi1g04118 756 Pfam Armadillo/beta-catenin-like repeat 363 402 IPR000225 GO:0005515
Vivi1g04118 756 Pfam Armadillo/beta-catenin-like repeat 279 318 IPR000225 GO:0005515
Vivi1g04118 756 SMART BTB_4 591 688 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04118 Vivi-Chr1 87547262 87559311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04118 192 561 U-box Gene Family AT1G23030 25.067 5.29e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi1g04118 BTB 4.2e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04118 - - vvo:131643451 1451.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04118 1 87547262 87559311 Vivi1g04118 1 87547262 87559311 ECH
Vivi2g04221 2 155627327 155636223 Vivi1g04118 1 87547262 87559311 PCT