Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04117 ATGTGCGCCCTGCCCGAAATACCCCTCCCATCTGTCATCCATTCAAATCCAAATTTCCATTTCTCGCCATTTCCTATCTCTTCTCTCTCTTTCCTTTCCGTTAACCAGAGCGCCAACAACACATACTGTGAAAACCCGCCTCTTCTTCTCTCATCCATGGAGTTTCAGAGACGCCAAAGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGGAAGCTAGACGAAGAATCACAGGACGAGCCACAGATCTCGGCGACGCCGCCCACCGCCGACGAGCGTGCGGCAGTTTTAACTGAAGTGGAGAATCAGGTCAACATCCTCGAGTCGAGTTTCACGTGGAAGGAGTCCGACAGAGCAGCGGCGAAGCGTGCCACTCATGCGCTCGCTGATCTCGCGAAGAATGAGGAAGTGGTGAATGTTATTGTGGAAGGAGGTGCTATTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTGTGGAGGATTGCGATCAGAAGGTGTTGCCGTTTGAACATGAAGTTGAGAAAGGAAGTGCTTTCGCTCTAGGACTTCTTGCGGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACTCACCTTGTTGATCTTTTGAAGAGGCATAACAATGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTTGCACACGAGAATAGCAACATTAAAACCCGCGTCAGGATGGAAGGTGGAATTCCTCCACTTATTCATTTGCTTGAGTCTGCCGACACAAAGGTGCAAAGAGCTGCTGCTGGTGCACTGAGAACCCTAGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATGCTCTTCCGACTCTGATTCTAATGTTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTTCACTCTTCTCCTAATATAAAGAAAGAGGTTCTTTTTGCTGGTGCTCTACAACCAGTTATTGGATTACTTGGCTCCTGCTGCTCTGAGAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTCGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTTCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGATAATGTATCTGATTTCATAAGGGTAGGTGGTGTTCAAAGACTACAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTTCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGCTGAGCCATCTGTTATATCTCATGCGAGTTTCAGAAAGAGGTTTTCAAAGGCGAATTGCTTTAGTTCTTGCGCATCTATGTTCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAATTGCTTATCGGGCTCCTTTGCTCATCTAGCACCAAGCAGCAGCTTGATAGTGCCGTGGCATTATGCAAGTTGGCCAATAAAGCTTCAACTCTGTCTCCTGTAGACGCTGCTCCTCCTTCTCCAACACCACAGGTCTACTTAGGAGAGAAGTTTGTAAACAATGCTACGCTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGTTTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCGTTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATCCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTAAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTAGAGAACGTGTCGAATATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATTCTTTTTATCTTGAAGCACTTTGATAAGTTGAGCGCAAGGCCAGGGCACTCTCTTTTGATTCAGCGTACAATTCCAGAGATCCGCAATTACTTTGTTAACGCTCTTACAAATGCCAACTCCCATAGACAGTAA 2142 0.4458 MCALPEIPLPSVIHSNPNFHFSPFPISSLSFLSVNQSANNTYCENPPLLLSSMEFQRRQSHCLSERKGQKRKLDEESQDEPQISATPPTADERAAVLTEVENQVNILESSFTWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPVEDCDQKVLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTRVRMEGGIPPLIHLLESADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLGSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSSDVQLREMSAFALGRLAQDNVSDFIRVGGVQRLQEGEFIVQATKDCVSKTLKRLEEKIHGRVLSHLLYLMRVSERGFQRRIALVLAHLCSADDQRRIFIEHHGLELLIGLLCSSSTKQQLDSAVALCKLANKASTLSPVDAAPPSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTPDIAQDLLRAADQYLLEGLKRLCEYTIAQDILLENVSNMYELSEAFNAISLRHACILFILKHFDKLSARPGHSLLIQRTIPEIRNYFVNALTNANSHRQ 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04117 713 Gene3D - 219 325 IPR011989 -
Vivi1g04117 713 Gene3D Potassium Channel Kv1.1; Chain A 529 677 IPR011333 -
Vivi1g04117 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 248 IPR000225 GO:0005515
Vivi1g04117 713 FunFam Armadillo/beta-catenin repeat family protein 539 683 - -
Vivi1g04117 713 SUPERFAMILY ARM repeat 117 520 IPR016024 -
Vivi1g04117 713 SMART arm_5 321 361 IPR000225 GO:0005515
Vivi1g04117 713 SMART arm_5 187 235 IPR000225 GO:0005515
Vivi1g04117 713 SMART arm_5 279 319 IPR000225 GO:0005515
Vivi1g04117 713 SMART arm_5 363 403 IPR000225 GO:0005515
Vivi1g04117 713 SMART arm_5 476 516 IPR000225 GO:0005515
Vivi1g04117 713 SMART arm_5 237 277 IPR000225 GO:0005515
Vivi1g04117 713 SMART arm_5 134 186 IPR000225 GO:0005515
Vivi1g04117 713 Pfam BTB/POZ domain 542 643 IPR000210 GO:0005515
Vivi1g04117 713 Gene3D - 86 218 IPR011989 -
Vivi1g04117 713 CDD BTB_POZ_ARIA_plant 535 650 - -
Vivi1g04117 713 Gene3D - 326 526 IPR011989 -
Vivi1g04117 713 MobiDBLite consensus disorder prediction 60 90 - -
Vivi1g04117 713 Pfam Armadillo/beta-catenin-like repeat 363 402 IPR000225 GO:0005515
Vivi1g04117 713 Pfam Armadillo/beta-catenin-like repeat 279 318 IPR000225 GO:0005515
Vivi1g04117 713 Pfam Armadillo/beta-catenin-like repeat 244 276 IPR000225 GO:0005515
Vivi1g04117 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 199 IPR000225 GO:0005515
Vivi1g04117 713 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 404 709 IPR044282 -
Vivi1g04117 713 ProSiteProfiles BTB domain profile. 548 615 IPR000210 GO:0005515
Vivi1g04117 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 283 IPR000225 GO:0005515
Vivi1g04117 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 332 IPR000225 GO:0005515
Vivi1g04117 713 SUPERFAMILY POZ domain 540 642 IPR011333 -
Vivi1g04117 713 MobiDBLite consensus disorder prediction 60 79 - -
Vivi1g04117 713 SMART BTB_4 548 645 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04117 Vivi-Chr1 87547262 87559312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04117 250 489 U-box Gene Family AT3G46510 28.346 3.26e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi1g04117 BTB 3.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04117 - - vvo:131643451 1345.49