Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04116 ACACTCGCCACAAAGACTTTTGCTTCAACTCTTCACACACGCAACAATAACTTTACAAAACAAGGAAAATCAAAGGACTTTGTAACTCAATTGAATAAAACAACCACTTTTATTCAGAATTACTGTCCAAATACAACCACTTTTTCTCCAAATTCAGCCTACCAAACAAATCTCAACAAGCTTCTTTCTCTGCTTTCATCAAATTCCACCAACAAAAATGGCTTCTACTACACCACCGTCGGCCAAAACAACCCCGGAAACACAGTATACGGTGCCTTTCTCTGCCGCGGAGATCTCACAACAAAAGAATGCCAAGACTGTGTTTCCATAGCATCCAAACAAGTCCTTCAAAACTGTCCTAAATCAAAAGAATCAGTTATGTGGTTAGCTGAATGCATGATACGTTACTCAGACCTTTCTTTTTTCAACGTAGCTTCAGAAGCTCCTATGCGTGCTCTCCTGAACACTGCAAGTGTGACGGACCAAAGCCGGTTCATGCAACTTTTAGCAGATACAATGAACGCCGCTACGGTAGAGGCTGTGAATGGTGGAGGTGACAAAAAGTTTGGAACTAAAAAAGCAAATTTTACTAGCTTTCAGAATTTGTATACACTTGCACAGTGTACACCGGATTTGTCAAAGTCAGGATGTGAAAAATGCCTTACAATAGCAACTAATGAATTACCATCTTGCTGTAATGGAAAACAAGGTGGAAGAGTGCTTATTCCTAGTTGTAATATTAGGTATGAGCTTTATCCCTTTTATCACGAGTCGACTGTTCCTGCTCCTGAAGAATCGAGGCCAAATCCACAAGGTGCTGTCAAAGGAAAAAAATCCCGGAACTCGATAGTGATCATTGTTGCAATAGTATCTCCGGTTGTGATTATCGTATTGCTTACACCGTTAGTCTTATGGATCATATCTGAAAAGAAGAGAAGAAAAATCAATCCAGTGCCTGTGCCTGAAGAAAGCGTTGAAATCTCCAGAGTAGAATTCTTGCAATTTGATTTTGATACTATCGTAGCGGCCACAAACAACTTCAGTGATGACAATAAATTGGGAGAAGGGGGATTTGGCGATGTTTACAAGGGTATGTTAATTAATGGACAAGAGATTGCTGTGAAGAGGCTATCGAAAAGTTCTGGTCAAGGCATGGACGAATTCAAGAACGAGGTAGTTTTGGTGGCAAAACTACAACACCGAAATCTTGTTAGGATTCTTGGTTTTTGCTTGGACGGGGAAGAAAAGATGCTCGTTTATGAACTCATGCCCAACAAAAGTCTAGACTATTTTCTATTTGATCCTGAAAAAGCGCATCAGATGAACTGGCCAAGACGATACAAAATAATAGAGGGAGTTGCACGCGGAATACTTTATCTTCATGAAGATTCTCGACTTAGAATCATACACCGCGATCTTAAAGCTAGTAATATATTATTAGATGAGAATATGGATCCTAAAATTGCTGACTTTGGGATGGCAAGAATTTTCTGTGTTGATCAAACCCGAGGAATCACAAAAAGAGTTGTTGGAACATTCGGTTACATGTCTCCAGAGTATGCAATGCGTGGAGTGTTCTCTATCAAAACAGATGTGTATAGCTTTGGTGTCCTTGTTCTCGAGATAATTACTGGAAAGAAGATCACGTCCTTCCGTGAATCAGGCTATGCTGAGGACCTCTTGAGCTATGTTTGGAAAAAATGGAATGATGGGACACCAATGGAGTTACTTGACATGAGATTGAGAGATTCATACTCAAGAGTTGAAGTAACAAGATGCATCCATGTTGGGTTATGTTGTGTTCAAGAAGATCCAAATCAAAGACCATCCATGCAGACAATAGTTTTATTGCTAAGTAGCCATTCTGTTACTCTTAAACAGCCTCAAAGACCAGCAGGTTATATCAGTAGCAAATCTGATCAAAGCTTTTTAAGAAATGACTTTGAGAATTCAGAAAAATCTACAACTACAAGCAAATCAGCTAGAGTTTCTGTTGATGAAGCATCCATTACTCAGGTGTACCCTCGATGA 2031 0.3964 TLATKTFASTLHTRNNNFTKQGKSKDFVTQLNKTTTFIQNYCPNTTTFSPNSAYQTNLNKLLSLLSSNSTNKNGFYYTTVGQNNPGNTVYGAFLCRGDLTTKECQDCVSIASKQVLQNCPKSKESVMWLAECMIRYSDLSFFNVASEAPMRALLNTASVTDQSRFMQLLADTMNAATVEAVNGGGDKKFGTKKANFTSFQNLYTLAQCTPDLSKSGCEKCLTIATNELPSCCNGKQGGRVLIPSCNIRYELYPFYHESTVPAPEESRPNPQGAVKGKKSRNSIVIIVAIVSPVVIIVLLTPLVLWIISEKKRRKINPVPVPEESVEISRVEFLQFDFDTIVAATNNFSDDNKLGEGGFGDVYKGMLINGQEIAVKRLSKSSGQGMDEFKNEVVLVAKLQHRNLVRILGFCLDGEEKMLVYELMPNKSLDYFLFDPEKAHQMNWPRRYKIIEGVARGILYLHEDSRLRIIHRDLKASNILLDENMDPKIADFGMARIFCVDQTRGITKRVVGTFGYMSPEYAMRGVFSIKTDVYSFGVLVLEIITGKKITSFRESGYAEDLLSYVWKKWNDGTPMELLDMRLRDSYSRVEVTRCIHVGLCCVQEDPNQRPSMQTIVLLLSSHSVTLKQPQRPAGYISSKSDQSFLRNDFENSEKSTTTSKSARVSVDEASITQVYPR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04116 676 Pfam Salt stress response/antifungal 42 138 IPR002902 -
Vivi1g04116 676 Pfam Salt stress response/antifungal 159 252 IPR002902 -
Vivi1g04116 676 ProSiteProfiles Gnk2-homologous domain profile. 36 141 IPR002902 -
Vivi1g04116 676 FunFam Cysteine-rich receptor-like protein kinase 10 309 422 - -
Vivi1g04116 676 MobiDBLite consensus disorder prediction 648 667 - -
Vivi1g04116 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Vivi1g04116 676 SUPERFAMILY Protein kinase-like (PK-like) 332 639 IPR011009 -
Vivi1g04116 676 CDD STKc_IRAK 353 615 - -
Vivi1g04116 676 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 35 141 - -
Vivi1g04116 676 ProSiteProfiles Protein kinase domain profile. 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04116 676 Gene3D Phosphorylase Kinase; domain 1 309 422 - -
Vivi1g04116 676 ProSiteProfiles Gnk2-homologous domain profile. 147 254 IPR002902 -
Vivi1g04116 676 Gene3D - 148 254 IPR038408 -
Vivi1g04116 676 Gene3D - 33 141 IPR038408 -
Vivi1g04116 676 Gene3D Transferase(Phosphotransferase) domain 1 423 633 - -
Vivi1g04116 676 Pfam Protein tyrosine and serine/threonine kinase 350 616 IPR001245 GO:0004672|GO:0006468
Vivi1g04116 676 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 672 - -
Vivi1g04116 676 FunFam cysteine-rich receptor-like protein kinase 10 423 625 - -
Vivi1g04116 676 SMART serkin_6 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04116 676 FunFam Cysteine-rich receptor-like protein kinase 25 149 254 - -
Vivi1g04116 676 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Vivi1g04116 676 MobiDBLite consensus disorder prediction 648 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04116 Vivi-Chr1 87533084 87536006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04116 36 676 Receptor kinase-like Gene Family AT4G05200 52.134 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04116 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04116 - - cit:127900229 730.324