Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04114 ATGAGCAGCTCAAGAATAGTTCCCACGTATGAAGATGCAGAAGCATTTATGGCGGCAGCAAAATTGGTGTTGAAAGATAAGAGAGGAAAGTATAAAGAATTCTCACAACTCCTAATTGATTACGATGCCAGAAGAGTTGATATAGGAGCTGTCAAAGAATTAGCGATAGAGTTGTTTAAAGAGCATGAAGATTTGATTTCAAGATTCAACAACTTCTTGCCACGGGGTCACCAAATCTCACTTCCTTTGGATGATGAACAAGGAAGTAATGATGATGCATTAGCGGTCGAAGATGAACAGAAAGATGATGAACAACAAGGTGATGATGATGCATTAGTGGTCAAAGATGATGAAGATCAAGGTGATGATGATGCATTAGCAGTCAAAGATGAACAGAACAATGATATACAACAAGTTGATGGCGATGCATTGGTGGTCAAAGATGATCAGAAAAATGATGAACAACAAGGTAATGGCGATGCATTTGCGGCCAAAAATGAACAGAAAGATGATGAACATCAAGGTGGTGACGGTGCATTTGCGGCCAAAGAAGAACAAAAAGTTGATGAACAACAAGGTGATGGCGATGCATTTGCGGTCAAAGATGATGAACAGAAAGGTGGTGGCGATACACTCTCTGTCAAAGATGATGAACATCAAGGTAATGGCGATGCATTAGCGGTCAAAGATGATGAACATCAAGGTGACGACTATGCACTAGCAGTCAAACTCAAAGATGAACAGAACTATGATATACAACAAGGTGATGGCGATGCATTAGTGGTCAAAGATGATGAAGATCAAGGTGATGATGATGCATTAGTAGTCATAGATGATGAACAACAAAGTGATGATGATGCATTTGCGGCCAAAGATGAACAGAAAGATGATGAACATCAAGGTGATGATGTCAATGCATTAGTGGTCGAAGATGAACATAATGGTGAACAACGAGGTGATGACGATGCATTGATGGTCGAAGATGAACAGAAAGATGATGAACAACAAAGTGGTGACGATGCATTTGTAGCAAAAGAAGAACAAAAAGATGATGAGCAACAAGGTGATGGCGATGCATTTGCGGTCAAAGATGATGAACAGAAAGGTGGTGGCGATACATTTGCGATCAAAGATGATGAACAACAAGGTGATGACTGTGCATTAGCAGTCATAGATGATGAACAAAAAAGGGATGATGATGCATTTGCGACCAAAGATGAACAAAAATATGAGGAACAACAAGGTGATCATGATACATTAGCGGTCAAAGATGAACATCAAGGTGATGACGGTGCGTTAGTGGTCGAAGATGAACATAATGATGGACAGCAAGGTGATGATGATGCATTAATGGTGGAAGATGAACAGAAAGATGATGAACATCAAGGTGATGATGATGATGCATTAGCAGTGAAAGATGAACAGAAAGATGATGAACATCAAGGTGATGATGATGATGCATTAGCAGTGAAAGATGATAAGAAAGACGATGAAGAAAAACAAGTTTGA 1509 0.3963 MSSSRIVPTYEDAEAFMAAAKLVLKDKRGKYKEFSQLLIDYDARRVDIGAVKELAIELFKEHEDLISRFNNFLPRGHQISLPLDDEQGSNDDALAVEDEQKDDEQQGDDDALVVKDDEDQGDDDALAVKDEQNNDIQQVDGDALVVKDDQKNDEQQGNGDAFAAKNEQKDDEHQGGDGAFAAKEEQKVDEQQGDGDAFAVKDDEQKGGGDTLSVKDDEHQGNGDALAVKDDEHQGDDYALAVKLKDEQNYDIQQGDGDALVVKDDEDQGDDDALVVIDDEQQSDDDAFAAKDEQKDDEHQGDDVNALVVEDEHNGEQRGDDDALMVEDEQKDDEQQSGDDAFVAKEEQKDDEQQGDGDAFAVKDDEQKGGGDTFAIKDDEQQGDDCALAVIDDEQKRDDDAFATKDEQKYEEQQGDHDTLAVKDEHQGDDGALVVEDEHNDGQQGDDDALMVEDEQKDDEHQGDDDDALAVKDEQKDDEHQGDDDDALAVKDDKKDDEEKQV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04114 502 ProSiteProfiles PAH domain profile. 7 76 IPR003822 GO:0006355
Vivi1g04114 502 PANTHER SIN3B-RELATED 9 122 IPR039774 GO:0003714
Vivi1g04114 502 Pfam Paired amphipathic helix repeat 30 73 IPR003822 GO:0006355
Vivi1g04114 502 MobiDBLite consensus disorder prediction 336 446 - -
Vivi1g04114 502 SUPERFAMILY PAH2 domain 8 75 IPR036600 GO:0006355
Vivi1g04114 502 MobiDBLite consensus disorder prediction 164 234 - -
Vivi1g04114 502 MobiDBLite consensus disorder prediction 249 502 - -
Vivi1g04114 502 MobiDBLite consensus disorder prediction 263 286 - -
Vivi1g04114 502 MobiDBLite consensus disorder prediction 447 462 - -
Vivi1g04114 502 MobiDBLite consensus disorder prediction 150 234 - -
Vivi1g04114 502 MobiDBLite consensus disorder prediction 287 325 - -
Vivi1g04114 502 MobiDBLite consensus disorder prediction 463 502 - -
Vivi1g04114 502 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Vivi1g04114 502 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04114 Vivi-Chr1 87520536 87522044 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g04114 PAH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04114 - - vvo:131648607 892.493