Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04111 ATGAGCAGTTCAAGAACAGATCACACGTTTGATGATGTATTGGCGTATGTAAAGACAGTGAGATTTGTGTTTGAAGATAAGATTGAAAAGTTTGACGAATTTGTCAAACTTATACGTGATTATGAAGCCAGAAGAATTGGTATAGAAGCTGTGAAAGAAGGAGCGATAGAGTTGTTTAAAGAGCACAAAGATTTACTTTCAAGATTCAATATCTTCCTGCCAGGAAACGAAATTTCACTTCCATTGGATGATGAACAGCAAGGTGATGGTGATGAGTTTGCGGTCAAAGATGAAAACCAAGGTGATGATGATGCATTAGTGGTGGAAGATGAACAGAAAAACGATGAACTGCTAGGTGATGGTGATCTCCTAGCGGTCAAAGATGAAAAACAAGGTGTTGATGATGCATTAGTGGTGGAAGATGAACAGCAAGGTAAAGATGATGCATTTGCTGAGAAAAATGAACAGAAAGATGATGAGAAAAAAGGTAATGATGATGAATTTGCGGACAAAGATGAACAAAAAGGTGATCAAGATGCATTAGCAGTCAAAGGTGAACAGAGAGTTGATGAACAACAAGCTGATTGTGATGCATTAATGGTCGAAGATGAACAGAAAGATGATGAACAACAAGGTGATGGCGATACATTAGCGGCCAAAGATGATGAAGATCAAGGTGATGGTGATGAATTAGCAGTCATAGATGATGAGCAACAAAGTGATGATGATGCATTTGCGGCCAAAGATGAACTTAAAGATGATGAACAAGGTGATCAAGATGCATTAGCAGTCAAAGGTGAACAGAAAGATGATGAACAACAGGGTGATGGTGATGCATTAATGGTCGAAGATGAACAGAAAGATGATGAACAAGGTGATGGCAATGCATTAATGGTTGAAGATGAACATAATGATGAACAACAAGGTGACTACGATGCATTAATGGCCGAAGATGAACATAATGAAGATGAACAACAAGGTGATGGCGATGCATTAGCAGTCAATGATGATCAGAAAAATAGCGAACGGCGAGGTGATGACAATGCCTTAGCAGTCAAAGATGATCAGAAAAATGATGAACATCAAGGTGATGATGATGCATTAGCAGTCAAAGATGATCAGAAAAATGATGAACATCAAGGTGATGATGATGCATTAGCAGTCAAAGATGATCAGAAAAATGATGAACATCAAGGTGATGATGATGCATTAGCAGTCAAAGATGATCAGAAAAATGATGAACATCAAGGTGATGATGATGCATTAGCAGTCAAAGATGAAGAACAAGTTTGA 1293 0.3813 MSSSRTDHTFDDVLAYVKTVRFVFEDKIEKFDEFVKLIRDYEARRIGIEAVKEGAIELFKEHKDLLSRFNIFLPGNEISLPLDDEQQGDGDEFAVKDENQGDDDALVVEDEQKNDELLGDGDLLAVKDEKQGVDDALVVEDEQQGKDDAFAEKNEQKDDEKKGNDDEFADKDEQKGDQDALAVKGEQRVDEQQADCDALMVEDEQKDDEQQGDGDTLAAKDDEDQGDGDELAVIDDEQQSDDDAFAAKDELKDDEQGDQDALAVKGEQKDDEQQGDGDALMVEDEQKDDEQGDGNALMVEDEHNDEQQGDYDALMAEDEHNEDEQQGDGDALAVNDDQKNSERRGDDNALAVKDDQKNDEHQGDDDALAVKDDQKNDEHQGDDDALAVKDDQKNDEHQGDDDALAVKDDQKNDEHQGDDDALAVKDEEQV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04111 430 MobiDBLite consensus disorder prediction 291 315 - -
Vivi1g04111 430 MobiDBLite consensus disorder prediction 244 276 - -
Vivi1g04111 430 MobiDBLite consensus disorder prediction 222 243 - -
Vivi1g04111 430 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Vivi1g04111 430 MobiDBLite consensus disorder prediction 335 430 - -
Vivi1g04111 430 MobiDBLite consensus disorder prediction 139 195 - -
Vivi1g04111 430 MobiDBLite consensus disorder prediction 82 103 - -
Vivi1g04111 430 MobiDBLite consensus disorder prediction 139 430 - -
Vivi1g04111 430 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Vivi1g04111 430 Pfam Paired amphipathic helix repeat 29 73 IPR003822 GO:0006355
Vivi1g04111 430 SUPERFAMILY PAH2 domain 5 74 IPR036600 GO:0006355
Vivi1g04111 430 MobiDBLite consensus disorder prediction 196 210 - -
Vivi1g04111 430 PANTHER SIN3B-RELATED 9 129 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04111 Vivi-Chr1 87499082 87500374 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g04111 PAH 8.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04111 - - vvo:131648591 842.802