Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04110 ATGAGCAGTTCAAGAAGTGATCCCATGTTTGGTCATGCAATGGTGTTTGTAGCGAAAGCAAAATCTATGCTTACGACAGAAAAGTATAGCGAGTTTTTAACACTCCTATACAATTACCAGCGTGCCAGAAGAATTGATATAGGAGTTTTCAAACAAGGAGTATTTGAGTTGTTTAAAGAGCATAAAGATTTAATTTCAAGATTCAACATGTTCTTGCCTCAGGGACACAAATTCTCACTTCCATTGGATGATGATGATGATGATGCATTTGCGGTCGAAGATGAAAAGAAGGATGTTGCATTGGCAGTCAAAGATGATGAACATCAAGGTGATGGCGGTGCATTAACAGTAAAAAAAGAACCGAAAGATCATGATGAACATCAAGGTGGTGGCGGTGCATTAACAGTCAAAGAAGAACCGAAAAACGATGAAGGAAAAAAAGTTTGA 447 0.3803 MSSSRSDPMFGHAMVFVAKAKSMLTTEKYSEFLTLLYNYQRARRIDIGVFKQGVFELFKEHKDLISRFNMFLPQGHKFSLPLDDDDDDAFAVEDEKKDVALAVKDDEHQGDGGALTVKKEPKDHDEHQGGGGALTVKEEPKNDEGKKV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04110 148 PANTHER SIN3B-RELATED 17 97 IPR039774 GO:0003714
Vivi1g04110 148 Pfam Paired amphipathic helix repeat 27 72 IPR003822 GO:0006355
Vivi1g04110 148 MobiDBLite consensus disorder prediction 101 148 - -
Vivi1g04110 148 Gene3D Paired amphipathic helix 6 75 IPR036600 GO:0006355
Vivi1g04110 148 SUPERFAMILY PAH2 domain 5 74 IPR036600 GO:0006355
Vivi1g04110 148 ProSiteProfiles PAH domain profile. 5 75 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04110 Vivi-Chr1 87497196 87497642 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g04110 PAH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04110 - K27104 vvo:131648581 288.885