Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04098 ATGGCGCAACCATCATCATCCTCATCCTCATCCTCACACTCACTCCTTAATCCCGACGCCGTAGACGATGTTTACTTCTCCGTCGTCTCCGACGATGAAACTGATCCTACCCCCGTCTCCGATCACAAGTACGCTGAAGCATTACAGTTTCAAGAAGCGCTAATGTCCTCCGTCATCACTTCTTCACAACCACCACAACCACCACCATGCGTAGCATCGTCGTCAAGAACCGTCGATGAAGAGTCACTGTTCAATGAAACCCTTGTGGACTCACTCATCACTTCCCAATACGTTTCCTCGTCAACCTCACCGCCATTACTCTGCGTACCATCATCATCATCATCATCATCAAAGGCCGTTGAAGTTGACACTATCGTGAACAATGAAGAACAAGAACCGATCATCATTTGCGAGATTTGCGCTGAAGCAAAAACCGACGACGAAATGTTCAGGAACCAAAGATGTCACCATTCCTTTTGTTCCGAATGTGTTGTCAAACAAGTTGCAACAAAAATCCAAGAAAACATAACGGTTGTTTCTTGTCCCGGTTTGAACTGCAAGGGTGTGTTGGAGCTTGAAACCCTTAGGCCATTGCTTCCCAAAGAAGTGATTGATAGGTGGGATGATGCAATGTGTGAGGCTCTTTTGCTTGCTGTTCCGAAATTCTATTGTCCGTTTAAGGATTGTTCGGCGATGTTGCTTGATGAAAATGAAGAGGGGGAAGAGATTAGGGAATCTGAGTGCCCTTTTTGTCATAGGTTGTTTTGTGCTAGGTGTCATGTTTCTTGGCACCCTGGGGTTGGTTGTGAGGAGTTTCAGACATTGAATGTGGATGAAAGGGGGAGGGAGGATCTTTTGGTTAGAGAGCTTGCTAATGAGAAGAAATGGAAGAGGTGTTCTAAGTGTAGGTACTATGTTGAAAAAAAGGATGGATGTTTGCACATTACATGCAGGTGCAAATATGAGTTTTGCTACGCTTGCGGTGAACAATGGACAAATACTCATGGTGGGTGCCAAAGAAATTAG 1026 0.4513 MAQPSSSSSSSSHSLLNPDAVDDVYFSVVSDDETDPTPVSDHKYAEALQFQEALMSSVITSSQPPQPPPCVASSSRTVDEESLFNETLVDSLITSQYVSSSTSPPLLCVPSSSSSSSKAVEVDTIVNNEEQEPIIICEICAEAKTDDEMFRNQRCHHSFCSECVVKQVATKIQENITVVSCPGLNCKGVLELETLRPLLPKEVIDRWDDAMCEALLLAVPKFYCPFKDCSAMLLDENEEGEEIRESECPFCHRLFCARCHVSWHPGVGCEEFQTLNVDERGREDLLVRELANEKKWKRCSKCRYYVEKKDGCLHITCRCKYEFCYACGEQWTNTHGGCQRN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04098 341 ProSitePatterns Zinc finger RING-type signature. 155 164 IPR017907 -
Vivi1g04098 341 FunFam RBR-type E3 ubiquitin transferase 132 218 - -
Vivi1g04098 341 ProSiteProfiles TRIAD supradomain profile. 133 341 IPR044066 -
Vivi1g04098 341 Gene3D - 267 341 - -
Vivi1g04098 341 ProSiteProfiles Zinc finger RING-type profile. 137 182 IPR001841 -
Vivi1g04098 341 Pfam IBR domain, a half RING-finger domain 288 338 IPR002867 GO:0008270
Vivi1g04098 341 Pfam IBR domain, a half RING-finger domain 221 269 IPR002867 GO:0008270
Vivi1g04098 341 SUPERFAMILY RING/U-box 209 274 - -
Vivi1g04098 341 CDD Rcat_RBR_unk 295 331 - -
Vivi1g04098 341 CDD BRcat_RBR_unk 220 272 - -
Vivi1g04098 341 SUPERFAMILY RING/U-box 280 339 - -
Vivi1g04098 341 SMART ibrneu5 279 338 IPR002867 GO:0008270
Vivi1g04098 341 SMART ibrneu5 205 269 IPR002867 GO:0008270
Vivi1g04098 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 215 IPR013083 -
Vivi1g04098 341 FunFam RBR-type E3 ubiquitin transferase 271 341 - -
Vivi1g04098 341 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 331 IPR031127 GO:0004842|GO:0016567
Vivi1g04098 341 SUPERFAMILY RING/U-box 132 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04098 Vivi-Chr1 87278736 87281575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04098 137 328 C3H Transcription Factor Family AT2G19610 29.064 2.92e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04098 K11975 - qsa:O6P43_027978 362.459