Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04096 ATGAGCACTGGTCGGCACTCACGTGAACAAATACGAGAATTGGAAAAGGTTTTCAAGCATTGCCCTCACCCTGATCAAGAGGAAAGGGACAAGTTGAGTCGCGTGCTAGGTCTTGCGCCAATCCAAATCAAGTTTTGGTTCCAAAACAAGAGAAATCAAGATAAGGTAATGCATGAACACCACCAAAACAATCATTTGAGACTAGAGAATGCAAGGCTTCGTACCGAGAATGAGATGCGTAAGGAGGTGTTAAAAAACACTAGATGTCTGCACTGTGGAGGGCCAGTTTCTATTGGTAAATCATGCTTTAACCAAAACCAACTTAGAATTGAGAATTCCAAATTAAAGGCTGAGATTGAAATGTTGTCGGGAGTTTTGAGAAATGATAGAAATGTAGTGGAAAGTGATAATGATATCACTTCAAGTATGATTAAGGAGTTGTACTATGATGGTAATGATCCATTTGGTTCAATTTCAACTCCTTATTTTGACAAACAGAAAATTGTAGAACTTGCTATGGTTTCTATGGAGGAACTCACAAGGTTAACTCTAGCTGGAGATCCTTTATGGATCTCTACTAATGAGTGTGAGATTTTAAATGAATCTGAATACATTAGGGTTTTCCCTAATGTAATAGGTCCAAAACTCACGGGGTTTATATCTGAATCTTCAAGGGAATCAATGATTATTTCTATGAATCATGTTAATCTCATTGAGACTCTTATGAATGTGAATCAATGGTCTGCAATGTTTTCTGACATTGTTTCCAAAGCAATGACAATTGAAGTTCTATCACATGGAGTATCAGGAAACTACAATGGACAAGTACAAGTGATGTCAGCCGATTTTCAAGTTCCTTCACCACTTGTTCGTGCTCGTGAAAACTATTTCGTTAGATATTGTAAGAAGCACGAAGAAGGAACATGGGCGGTGGTTGATGTTTCCTTGGATCATCTTCGACCAAGTAGTAGCACAACGCCAAGAAGTCTAAGACGACCCTCCGGCTGTTTAATTCAAGAATTACCATATGGTTATTCGAAGGTTACATGGGTTGAGCATGTAGAAGTGGATCATACTACATTATTGTCGAATAGATTTTATAACTCTTCAATAACTTCAAGTCTTGCCTTTGGAGCTAAGCGATGGGTGGCATCACTAGGTAGACAATGTGAACGTCTTGCATGTTCAATGGCCACCAACATACCTGCACGAGACTATTGTGCGATAAACAAATTTCAAGGAAGGAAGATCTTACTGAATTTGGCGCAGAAAATGAAATTATGCTTTTCATCTGTTGTTGGTTCTTCTATAGAAAGTTGTTGGAATGTTCTAACACCTGATTCTCATGATGTGAGAGTCATGTCCAAAACAAACACTAAACCTGGAACACCTCTTGGCGTAATTCTTAATGGTGGAACATCTCTTTGGCTTCCAGTTCTTCCCAAGAGACTTTTTGATTTTCTTGGAAACCAAAATTCAAGAAGTGAGTGGAATATTCTTTCCATTGGGAGTATAATTAAAGAAATGGCACACATTGGACATGGTCGTGATCTTGGAAACTGTGTTTCTCTATTCCAAGTCAATAATCAAAACTACATGCAAAATAATAACATGCTTCTACTTGAAGAGAAAAGCATTGATAGAACTTCCTCACATGTAATATTTGCACCTGTTGATATCAACTCAATGAATGTAGTATTGAATGGTGGAGATCCAAATATTATTGCTTTGTTTCCTTCTGGTTTTGTTATTCTTCCATATGATGTTCAACTCAACAATGGAGGACCAATGCTAAATTCTATTGGATCTGGAGGTTGCCTATTGACAATTTCATTTCAGATTTTGGTTGGTTTGGATCCAGCATTAAGAATAGAAGATTGTTGGATAGAAGCTGTTGTGAATTTGATTAAGAACACAACTGAAAGAATCAAGGTTGCAATGGCATGA 1947 0.376 MSTGRHSREQIRELEKVFKHCPHPDQEERDKLSRVLGLAPIQIKFWFQNKRNQDKVMHEHHQNNHLRLENARLRTENEMRKEVLKNTRCLHCGGPVSIGKSCFNQNQLRIENSKLKAEIEMLSGVLRNDRNVVESDNDITSSMIKELYYDGNDPFGSISTPYFDKQKIVELAMVSMEELTRLTLAGDPLWISTNECEILNESEYIRVFPNVIGPKLTGFISESSRESMIISMNHVNLIETLMNVNQWSAMFSDIVSKAMTIEVLSHGVSGNYNGQVQVMSADFQVPSPLVRARENYFVRYCKKHEEGTWAVVDVSLDHLRPSSSTTPRSLRRPSGCLIQELPYGYSKVTWVEHVEVDHTTLLSNRFYNSSITSSLAFGAKRWVASLGRQCERLACSMATNIPARDYCAINKFQGRKILLNLAQKMKLCFSSVVGSSIESCWNVLTPDSHDVRVMSKTNTKPGTPLGVILNGGTSLWLPVLPKRLFDFLGNQNSRSEWNILSIGSIIKEMAHIGHGRDLGNCVSLFQVNNQNYMQNNNMLLLEEKSIDRTSSHVIFAPVDINSMNVVLNGGDPNIIALFPSGFVILPYDVQLNNGGPMLNSIGSGGCLLTISFQILVGLDPALRIEDCWIEAVVNLIKNTTERIKVAMA 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04096 648 ProSiteProfiles START domain profile. 161 395 IPR002913 GO:0008289
Vivi1g04096 648 SUPERFAMILY Homeodomain-like 4 64 IPR009057 -
Vivi1g04096 648 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 647 IPR042160 -
Vivi1g04096 648 SMART HOX_1 1 61 IPR001356 GO:0003677
Vivi1g04096 648 ProSiteProfiles 'Homeobox' domain profile. 1 57 IPR001356 GO:0003677
Vivi1g04096 648 Gene3D - 210 384 IPR023393 -
Vivi1g04096 648 CDD homeodomain 5 58 IPR001356 GO:0003677
Vivi1g04096 648 ProSitePatterns 'Homeobox' domain signature. 32 55 IPR017970 GO:0000981|GO:0006355
Vivi1g04096 648 SMART START_1 170 392 IPR002913 GO:0008289
Vivi1g04096 648 SUPERFAMILY Bet v1-like 439 637 - -
Vivi1g04096 648 SUPERFAMILY Bet v1-like 164 393 - -
Vivi1g04096 648 Gene3D - 2 73 - -
Vivi1g04096 648 Pfam Homeodomain 6 55 IPR001356 GO:0003677
Vivi1g04096 648 CDD START_ArGLABRA2_like 165 391 - -
Vivi1g04096 648 Pfam START domain 175 392 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04096 Vivi-Chr1 87043437 87047045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04096 5 648 Homeobox Transcription Factor Family AT4G04890 52.065 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g04096 START 7.8e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04096 K09338 - qsu:112016283 671.389