Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04090 ATGCAAGACTTCCTCGGCTCCATTCGCCGATCCATAGTTTTCTCATCTCCACCCGCACACGACGACGATGGACGCTTCACCGGATTCGCCAACAAGATCGGCTCCGCCATTCGTAAATCCAGAATCGGCCTCAAGTCTCCTCCTCCACCTCCGCCGCCAATTAGGTGGCGGAAAGGTGAGTTGATTGGTTCCGGTGCTTTCGGTCGAGTTTATATGGGTATGAACCTCGACTCCGGGGAGCTTATTGCCGTTAAACAGGTTTTGATCGAGCCTGGTATCGCTTTCAAGGCGAATACACAGGCTAATATTCGGGAGCTTGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATTCAAATATTGTTAGATACTTGGGAACGGCTAGAGAGGAAGATTCCTTGAATATTCTGCTGGAGTTTGTACCTGGTGGATCTATCTCGTCACTGTTGGGGAAATTCGGATCCTTTCCTGAGTCAGTTATAAGAACGTATACAAAACAGCTTTTAGAGGGGCTTGAATACCTTCACAATAACAGAATTATTCACAGGGACATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGTATTAAACTCGCAGACTTTGGTGCATCCAGGAAAGTCGTGGAATTGGCTACCATAAATGGAGCAAAGTCTATGAAGGGTACCCCACACTGGATGTCACCTGAAGTTGTTTTACAGACAGGATATACAACCTCTGCTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGTCAACAGTATCCCCAGGAGGTTTCAGCTCTTTTCTACATTGGGACAACTAGATCTCATCCACCAATACCTGAACATCTGTCTGCTGAGGCAAAGGACTTTTTGCTGAAATGCTTTCACAAGGAACCAGATTTAAGACCTTCTGCATCAGACTTGTTACTGCATCCATTCATCACTTGCGAGTATCAGGAATCTCATTCAATGTCACGCAGTTCGGTCAGGGACTCTTGCAATCGGATGGCAACACATGGGATGAACACTAGGAACTTTTTGGATTCCATCCAAGGATCAACCTGTACTGGCCTAAAGGATGTTTGTCAGATGGATAGTTTAAGGTTCTCAAATGCAAATCTTCTAAAACCAGGTTCCTACCAGGGAGCAGACAACTATGATGATGACATGTGTCGGATGGATGATGAAGATGATATTTTGGTTGCGTCATCAGTAAAAGCTAACTTCCTACTTGCTGCTGACGACATAAAGAGTTTCAATCCAATGTGCGAACCTGTGGAGGATGGCTGGGCTTGCATGTCTGATGAAACACTAAATTTGAAGAAAAGCAGACTGAACTTGTCCCCAGATCAAACTATTAGGAAAACTATGAGTACCAAACCATCTCCTAATGCAGAGAAGGAGTTTTCATTTTCAAGTGAACCTCTTGGTGTTGAAGATGATGATGAAGTGACAGAGTGCAAAATTAGAGCTTTCTTGGATGATAAGGCCTTTGAACTGAATAAGCTCCAAACACCTCTTTATGAAGAATTCTTTGGCAAATCAATTGCAGCCATTCCTCCTGTACCTGTTGCAGTTTCAAAGAGTAAAGTTATTTCAGATGTCTCAAATGTAACATCGAAAAGCGGGTCTCCTTGTCGAGATAGACGGCGATTCTCAATGGCTAGCATTACCAATGTAACAAGCCCTGAGAGTCATAGAAAATATCTTACGAAACCTGTGACTGCTCGTAGTAAACCTTTGCAGGAAATTCAGCCTTCTGAGCTTTATGAGTCAAAGGAGACTCTTCATGATGCTGAGCTGGGATCAAGTGTCAGCCCAAGCTTCTCCGAGAGGCAAAGGAAATGGAAAGAAGAACTTGCAGAAGAGCTTGAGCGGACGCGAGAGGTTATGCGTCAAACAGGTGGAGGGAAGATAACATCCCCAAAGGATCGCAATTTTCTCAGAGACTGA 1968 0.4426 MQDFLGSIRRSIVFSSPPAHDDDGRFTGFANKIGSAIRKSRIGLKSPPPPPPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIEPGIAFKANTQANIRELEEEVKLLKNLKHSNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRTYTKQLLEGLEYLHNNRIIHRDIKGANILVDNKGCIKLADFGASRKVVELATINGAKSMKGTPHWMSPEVVLQTGYTTSADIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTRSHPPIPEHLSAEAKDFLLKCFHKEPDLRPSASDLLLHPFITCEYQESHSMSRSSVRDSCNRMATHGMNTRNFLDSIQGSTCTGLKDVCQMDSLRFSNANLLKPGSYQGADNYDDDMCRMDDEDDILVASSVKANFLLAADDIKSFNPMCEPVEDGWACMSDETLNLKKSRLNLSPDQTIRKTMSTKPSPNAEKEFSFSSEPLGVEDDDEVTECKIRAFLDDKAFELNKLQTPLYEEFFGKSIAAIPPVPVAVSKSKVISDVSNVTSKSGSPCRDRRRFSMASITNVTSPESHRKYLTKPVTARSKPLQEIQPSELYESKETLHDAELGSSVSPSFSERQRKWKEELAEELERTREVMRQTGGGKITSPKDRNFLRD 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04090 655 ProSiteProfiles Protein kinase domain profile. 56 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04090 655 FunFam Mitogen-activated protein kinase kinase kinase 2 55 347 - -
Vivi1g04090 655 Coils Coil 96 116 - -
Vivi1g04090 655 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 49 332 - -
Vivi1g04090 655 FunFam Serine/threonine-protein kinase STE11 53 146 - -
Vivi1g04090 655 MobiDBLite consensus disorder prediction 578 620 - -
Vivi1g04090 655 Pfam Protein kinase domain 57 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04090 655 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Vivi1g04090 655 SMART serkin_6 56 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04090 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vivi1g04090 655 Gene3D Transferase(Phosphotransferase) domain 1 55 353 - -
Vivi1g04090 655 SUPERFAMILY Protein kinase-like (PK-like) 55 335 IPR011009 -
Vivi1g04090 655 CDD STKc_MAPKKK 55 319 - -
Vivi1g04090 655 MobiDBLite consensus disorder prediction 632 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04090 Vivi-Chr1 86951988 86960636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04090 1 645 MAP Kinase Kinase Kinase AT3G06030 54.887 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi1g04090 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04090 K20606 - gmx:100795863 871.307