Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04087 ATGGTACTGGATGAATGGAAAAGACTTTACTCAAACACTAAATCCAACTTCAGGGAGGTTGCAATCAAAGGATTTTGGGATATGTATGATCCTGAAGGATACTCTCTCTGGTTCTGTGACTACAAATACCAAGATGAGAACACTGTTTCCTTCGTGACTTTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTGGCCCGCAAGTATGCATTTGGAAAGATGCTTATCATTGGATCTGAGCCACCTTTTAAGATGCAAGTCAGTCCCGGATTTGAAAAAGAGAAAGTATATACATATGACTAG 306 0.402 MVLDEWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYQDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKMQVSPGFEKEKVYTYD 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04087 101 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 87 IPR044628 GO:0004364
Vivi1g04087 101 Pfam Elongation factor 1 gamma, conserved domain 1 86 IPR001662 GO:0003746|GO:0006414
Vivi1g04087 101 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 1 90 IPR036433 GO:0003746|GO:0006414
Vivi1g04087 101 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 1 101 IPR001662 GO:0003746|GO:0006414
Vivi1g04087 101 SUPERFAMILY eEF1-gamma domain 1 85 IPR036433 GO:0003746|GO:0006414
Vivi1g04087 101 SMART EF1G_2 1 93 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04087 Vivi-Chr1 86895564 86896830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04087 1 87 Eukaryotic Initiation Factors Gene Family AT1G57720 90.805 5.25e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04087 K03233 - vvo:131611445 216.853