Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04084 ATGATGAGACTGCGTCGTCCATTTTATGGAGTTGGAGATCCATTTGCCATGGACGCTGATGATCAATTAAGGAAGAAACGGGATTCTGAGAAACTATCAAGATTAGAAGAGGCAGAGAAAAATCATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTCAATACTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTTTGAAGCGGAGAAAGCAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCCACCCGTGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCCGTTCAACGTCAAAGGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCGCCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGTGACTCAAGCGATTTGCTTGAAGGTCAGCGACAATACAATTCTGCCATACATTCAATTCAGGAAAAGGTAACTGAACAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTGCAATGGATGATTTCTTTGTTTAATAACAATTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACTATTTCTCTTATAGCACATCTTTTGGAATACAAAGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCATCATGGGCCCCTAGCATTAAAGTTATTCTTTATGATGGACGAATGGATGAGAGAAAAGCAATAAAGGAGGAATTTTCAGGAGAGGGGAAATTTAATGTTATGATAACACATTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTCGCAAAAACCTTGGACAATAGCTATAACATCCAACGGAGACTTTTGCTGACTGGTACCCCTATTCAGAACAGTTTGCAAGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAACATATTCAACTCGGTTCAAAATTTTGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGACGTCTCTCTATCAGATGAAGAGCAACTATTAATCATTCGACGTCTGCATCAAGTTATAAGGCCTTTCATATTACGAAGAAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCATCCTGGCAGAAAGTTTATTATCAACAAGTTACTGACGTAGGCAGAGTTGGTTTGGACAATGGTTCTGGAAAATCGAAAAGTCTACAGAACCTAACAATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAATGTAAGGAGGAGATTGTTAGAGCATCAGGTAAATTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACACTCTAGAAGTTTATTTAAGACTTCATGATTTCAAGTATCTTAGACTAGATGGCTCAACGAAAACTGAAGAAAGAGGCTCTTTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTATTAAGCACCCGGGCTGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCTCATCGCATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTAAGTGTAGGATCAATTGAAGAGGTAATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGACGAGGCTCAAGTTCACTTGGGGCAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCCGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAGTGGGTGTATGCTCCAATTCAAAAGGATGACAAGGCCAAAAGTTTCAGCAGTGGTGTTACTGGAAAGCGAAAAAGAAAAGATGTGGTATATGCTGATACGTTGAGTGAGCAACAATGGATGAAGGCTATGGAGAATGGGGGTGACATGTCAACAGTTTTAGCTAAAGGAAAAAGAAGAGAGTCAAGAGATTATCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATACAGGGGCAGATGAAAGCTTATTTGGGTCAAGGACTAAAATTGCCCCCATAGAAAATGAAGATAGTTTCCATACCTCTCCTTCCTCAAAGAGGTTCAAGCCTGAAAGAACAAAATTTCAGAAACAGGCATACGAGGATGTCGGCGGAAGTGGTCTGAACCAGCATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCAAGGCCAGGGTTCATTATCCGATAGTAGAGGACAAAATTCAAATGGAAGAGGAAACTGGAATTGA 2790 0.4043 MMRLRRPFYGVGDPFAMDADDQLRKKRDSEKLSRLEEAEKNHIETTKRRFFAEILNTVRELQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWIIEFSSWAPSIKVILYDGRMDERKAIKEEFSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSSWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIQKDDKAKSFSSGVTGKRKRKDVVYADTLSEQQWMKAMENGGDMSTVLAKGKRRESRDYLSSDSIAQASDNTGADESLFGSRTKIAPIENEDSFHTSPSSKRFKPERTKFQKQAYEDVGGSGLNQHVFSWNTHKKKRSSHQGQGSLSDSRGQNSNGRGNWN 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04084 929 MobiDBLite consensus disorder prediction 146 197 - -
Vivi1g04084 929 Gene3D - 217 460 IPR038718 -
Vivi1g04084 929 MobiDBLite consensus disorder prediction 910 929 - -
Vivi1g04084 929 Pfam Snf2-ATP coupling, chromatin remodelling complex 744 803 IPR029295 GO:0042393
Vivi1g04084 929 SMART SnAC_2 743 803 IPR029295 GO:0042393
Vivi1g04084 929 Coils Coil 741 761 - -
Vivi1g04084 929 CDD SF2_C_SNF 528 661 - -
Vivi1g04084 929 Pfam SNF2-related domain 229 517 IPR000330 GO:0005524|GO:0140658
Vivi1g04084 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 704 IPR027417 -
Vivi1g04084 929 Pfam Helicase conserved C-terminal domain 537 650 IPR001650 -
Vivi1g04084 929 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 707 IPR001650 -
Vivi1g04084 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 451 IPR027417 -
Vivi1g04084 929 FunFam Probable ATP-dependent DNA helicase CHR12 457 756 - -
Vivi1g04084 929 Gene3D - 461 681 IPR027417 -
Vivi1g04084 929 SMART ultradead3 222 415 IPR014001 -
Vivi1g04084 929 MobiDBLite consensus disorder prediction 813 929 - -
Vivi1g04084 929 MobiDBLite consensus disorder prediction 863 881 - -
Vivi1g04084 929 PANTHER SNF2/RAD54 HELICASE FAMILY 21 837 - -
Vivi1g04084 929 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 404 IPR014001 -
Vivi1g04084 929 MobiDBLite consensus disorder prediction 829 846 - -
Vivi1g04084 929 SMART helicmild6 566 650 IPR001650 -
Vivi1g04084 929 FunFam Chromatin structure-remodeling complex protein SYD 217 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04084 Vivi-Chr1 86808823 86819918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04084 533 678 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.66e-20 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g04084 SNF2_N 9.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04084 - - gmx:100786280 1635.54