Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04083 ATGGCGATAGATGATGAAGAGAAGAACGAGAATGAACAACAACACACCAAAACACTCATCTGTGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCCAATCACATCCTCAACTCCGTCTCTTCCATCTATCATCACAACAACAGCGTCAATGGTGATGCAGGGAGTTCTGGAGATGATTTAATTACAGATCTTAAAGATGCAATATTGGAACAGCGTCCAAAATGTGCTTCACGTTTCAAATTGGAGGAAGCAATGGAAAGCCGTCATCAAAGTCAGATTTGGCATCGGTTAAATGAGCTTGAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGATTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAGTGTGCATATCCTGACAGGAAATTGTTTGATTGGGGCATGATGAGACTGCGTCGTCCATTTTATGGAGTTGGAGATCCATTTGCCATGGACGCTGATGATCAATTAAGGAAGAAACGGGATTCTGAGAAACTATCAAGATTAGAAGAGGCAGAGAAAAATCATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTCAATACTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTTTGAAGCGGAGAAAGCAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCCACCCGTGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCCGTTCAACGTCAAAGGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCGCCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGTGACTCAAGCGATTTGCTTGAAGGTCAGCGACAATACAATTCTGCCATACATTCAATTCAGGAAAAGGTAACTGAACAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTGCAATGGATGATTTCTTTGTTTAATAACAATTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACTATTTCTCTTATAGCACATCTTTTGGAATACAAAGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCATCATGGGCCCCTAGCATTAAAGTTATTCTTTATGATGGACGAATGGATGAGAGAAAAGCAATAAAGGAGGAATTTTCAGGAGAGGGGAAATTTAATGTTATGATAACACATTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTCGCAAAAACCTTGGACAATAGCTATAACATCCAACGGAGACTTTTGCTGACTGGTACCCCTATTCAGAACAGTTTGCAAGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAACATATTCAACTCGGTTCAAAATTTTGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGACGTCTCTCTATCAGATGAAGAGCAACTATTAATCATTCGACGTCTGCATCAAGTTATAAGGCCTTTCATATTACGAAGAAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCATCCTGGCAGAAAGTTTATTATCAACAAGTTACTGACGTAGGCAGAGTTGGTTTGGACAATGGTTCTGGAAAATCGAAAAGTCTACAGAACCTAACAATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAATGTAAGGAGGAGATTGTTAGAGCATCAGGTAAATTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACACTCTAGAAGTTTATTTAAGACTTCATGATTTCAAGTATCTTAGACTAGATGGCTCAACGAAAACTGAAGAAAGAGGCTCTTTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTATTAAGCACCCGGGCTGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCTCATCGCATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTAAGTGTAGGATCAATTGAAGAGGTAATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGACGAGGCTCAAGTTCACTTGGGGCAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCCGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAGTGGGTGTATGCTCCAATTCAAAAGGATGACAAGGCCAAAAGTTTCAGCAGTGGTGTTACTGGAAAGCGAAAAAGAAAAGATGTGGTATATGCTGATACGTTGAGTGAGCAACAATGGATGAAGGCTATGGAGAATGGGGGTGACATGTCAACAGTTTTAGCTAAAGGAAAAAGAAGAGAGTCAAGAGATTATCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATACAGGGGCAGATGAAAGCTTATTTGGGTCAAGGACTAAAATTGCCCCCATAGAAAATGAAGATAGTTTCCATACCTCTCCTTCCTCAAAGAGGTTCAAGCCTGAAAGAACAAAATTTCAGAAACAGGCATACGAGGATGTCGGCGGAAGTGGTCTGAACCAGCATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCAAGGCCAGGGTTCATTATCCGATAGTAGAGGACAAAATTCAAATGGAAGAGGAAACTGGAATTGA 3261 0.4091 MAIDDEEKNENEQQHTKTLICALNFLSRDVPLPNHILNSVSSIYHHNNSVNGDAGSSGDDLITDLKDAILEQRPKCASRFKLEEAMESRHQSQIWHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKIRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPFYGVGDPFAMDADDQLRKKRDSEKLSRLEEAEKNHIETTKRRFFAEILNTVRELQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWIIEFSSWAPSIKVILYDGRMDERKAIKEEFSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSSWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIQKDDKAKSFSSGVTGKRKRKDVVYADTLSEQQWMKAMENGGDMSTVLAKGKRRESRDYLSSDSIAQASDNTGADESLFGSRTKIAPIENEDSFHTSPSSKRFKPERTKFQKQAYEDVGGSGLNQHVFSWNTHKKKRSSHQGQGSLSDSRGQNSNGRGNWN 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04083 1086 MobiDBLite consensus disorder prediction 303 354 - -
Vivi1g04083 1086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 864 IPR001650 -
Vivi1g04083 1086 MobiDBLite consensus disorder prediction 1067 1086 - -
Vivi1g04083 1086 Gene3D - 618 838 IPR027417 -
Vivi1g04083 1086 Pfam Helicase conserved C-terminal domain 694 807 IPR001650 -
Vivi1g04083 1086 Coils Coil 898 918 - -
Vivi1g04083 1086 CDD SF2_C_SNF 685 818 - -
Vivi1g04083 1086 SMART helicmild6 723 807 IPR001650 -
Vivi1g04083 1086 MobiDBLite consensus disorder prediction 1020 1038 - -
Vivi1g04083 1086 MobiDBLite consensus disorder prediction 986 1003 - -
Vivi1g04083 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 861 IPR027417 -
Vivi1g04083 1086 FunFam Probable ATP-dependent DNA helicase CHR12 614 913 - -
Vivi1g04083 1086 Pfam SNF2-related domain 386 674 IPR000330 GO:0005524|GO:0140658
Vivi1g04083 1086 Pfam Snf2-ATP coupling, chromatin remodelling complex 901 960 IPR029295 GO:0042393
Vivi1g04083 1086 MobiDBLite consensus disorder prediction 970 1086 - -
Vivi1g04083 1086 FunFam Chromatin structure-remodeling complex protein SYD 374 617 - -
Vivi1g04083 1086 Gene3D - 374 617 IPR038718 -
Vivi1g04083 1086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 395 561 IPR014001 -
Vivi1g04083 1086 PANTHER SNF2/RAD54 HELICASE FAMILY 174 994 - -
Vivi1g04083 1086 SMART SnAC_2 900 960 IPR029295 GO:0042393
Vivi1g04083 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 608 IPR027417 -
Vivi1g04083 1086 SMART ultradead3 379 572 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04083 Vivi-Chr1 86808823 86821134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04083 690 835 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.36e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g04083 SNF2_N 1.2e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04083 - - gmx:100786280 1851.64