Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04079 ATGAGCAGTTCAAGAAGTGATCCCATGTTTGGTCATGAACTGGTGTTCGTAAAGAAAGCAAAATCTGTGGTTACGGCAGAAAAGTATAATGAATTTTTAAGCCTCCTGTACAATTACCATGGCAGAAGAATTGATATAGGAGTTTTCAAAGATGGAGTATTAGAGTTGTTTAAAGAGCATGAAGATTTAATTTCAAGATTCAACGTGTTCTTGCCTCGGGGACACGAAATCTCAGTTCCATTGGATGGTGAACATCAAGGTGATGTCGATGCATTAGCGGTCGAAGACGATGAACAACAAGGTGATGAAGATGCATTAGCAGCCAAAGATGAACAGAAAGAAGATGAAGAAAAACAAGTTTGA 363 0.3857 MSSSRSDPMFGHELVFVKKAKSVVTAEKYNEFLSLLYNYHGRRIDIGVFKDGVLELFKEHEDLISRFNVFLPRGHEISVPLDGEHQGDVDALAVEDDEQQGDEDALAAKDEQKEDEEKQV 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04079 120 Pfam Paired amphipathic helix repeat 27 71 IPR003822 GO:0006355
Vivi1g04079 120 PANTHER SIN3B-RELATED 25 98 IPR039774 GO:0003714
Vivi1g04079 120 MobiDBLite consensus disorder prediction 105 120 - -
Vivi1g04079 120 SUPERFAMILY PAH2 domain 5 73 IPR036600 GO:0006355
Vivi1g04079 120 ProSiteProfiles PAH domain profile. 5 74 IPR003822 GO:0006355
Vivi1g04079 120 MobiDBLite consensus disorder prediction 97 120 - -
Vivi1g04079 120 Gene3D Paired amphipathic helix 7 73 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04079 Vivi-Chr1 86765802 86766164 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g04079 PAH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04079 - K11644 psat:127093807 162.155