Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04072 ATGGATTCCTTCAGTTTTCTGTTTCTACTTGCAACTTTCTCTTTCCACTTTGTCCATTGCTCTTCTTCTCCCATCATGCAAGCTGCTATTGATAATGACACACATGCTTACTATAACTGCACAAGGAACAGCACTTCTGCAACGTATAACACTTACCGTTCCAACATCAAAACACTCCTAGATTTGCTCTCCTCCAATAGTAGTAATAATGCAAGATACTACAACGCCACAGTTGTTGGCGACAATAACGTGGACACTGTCTACGGTCTCTTCCTTTGCGTTAGAGACATTGACCCCAAAGTCTGCCAGTCGTGTGTGATAGAAGCAGCCAAAATCATATCATCACTGTGCACCACTGCAAAAGAAGCCGTAGTTTGGTACACAATATGCTATGTGCGCTATTCTGATAATAGCTTCTTTTCCATCGTTGAGAAAACTCCAGAACTTTCTTTCATGAACGATAAGGATTATGTCGGTCAGGTTGGAAGCTTCAACAACATTCTTTGGGATATGTTGAACGATTTGAGAAATGCAGCAGCAAATTCTTCTGCAAAGTTGGCTAACAAGTCGACGAATCTCACAGAAAACCAAAAACTATATGCCAACGCTTGGTGCCTCCCATACCTATCTGCAGAAAACTGCAGGTGGTGTCTTACGGATGCCATAGCAGAAGTTCCAACTAGTTGCTGCAGAGGAAAATCTGGAGGCACGATATTTTATCCCAGTTGTGGTGTTAGATTCGAATTATATCCATTTCGCAAGACATACGAAAGTATTTCTTGGGTGCCACCATCACCCACAAGTCCTAACTCTTTAGCTCCACCAGGAAAACAGAAGACAAAAACAATATTTGAGATCATTGTTCCAATTATTGTTTTACTGGTGCTTTTAGTCTTGGGATATTGTTGCTTTCTATATAGAAAAGAAAGAAAGAGCAAGCATGATATTCTCAAAGAAAGCTTTGGAGATGACATTAGCACTTTGGAGTCCTTGCAATTTGAATTTGCCCAAATTGAAGCAGCAACAAACAGATTTGCTGCAGAAAACAGGATAGGCAAAGGTGGTTTCGGAGAAGTATACAAGGGAATTCTTTCGGATGGACAAGAAATTGCTGTGAAGAGGCTTACAAGAAGCTCTGGACAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCCAAGCTTCAACATAGAAATCTAGTGAGATTACTAGGATTTTGTTTGGAAGAAGAGGAAAAAATACTTATCTACGAGTATGTGCCAAACAAGAGTCTTGATTACTTTTTATTTGATCTCCAGAAGAGAAAACTACTATCTTGGTCTCAACGTCAGAAGATCATCAAAGGAATTGCCCGTGGAATTCTTTATCTCCATGAAGATTCCCGCCTCAAAATAATACATCGTGATCTGAAACCTAGCAATGTTTTGTTAGATAGTAATATGAATCCAAAAATATCAGATTTTGGCATGGCTAGAATTGTATCTATAGATCAAATTGAAGAAAGCACATGCACGATTGTAGGAACATATGGTTACATATCTCCAGAATATGCAATGCATGGATATTTCTCTGTGAAATCCGATGTGTATAGTTTCGGAATCATGGTTCTAGAGATTATTAGTGGAAAGAGGAAAGGTTGTTCTGCTGAATCAGAGTGTATAGATGACATCCGGAGATACGCATGGACAAAATGGGCATCGCAAACACCACTCGAACTAATGGATTCTAGTATAGAAGGAACCTATTCCCAAGAAGAAGTCATCAAGTACATCCACATTGGTTTGTTATGTGTTCAGGAAGATCCAGATGAAAGACCTACAATGGCAACAATTGCATTTTACCTGAACAGCTCTTCAATCAACTTGCCGTCCCCTCTTGAACCACCGTATTTTAAGCGTAGCGGAAATGAAGAAAACATGGCCCCCAACAAGGAGTCAGACAATATTGGTGATTCAAACAACGGTATCACTATGACTCAATTCTTTCCGCGTTAA 1998 0.3964 MDSFSFLFLLATFSFHFVHCSSSPIMQAAIDNDTHAYYNCTRNSTSATYNTYRSNIKTLLDLLSSNSSNNARYYNATVVGDNNVDTVYGLFLCVRDIDPKVCQSCVIEAAKIISSLCTTAKEAVVWYTICYVRYSDNSFFSIVEKTPELSFMNDKDYVGQVGSFNNILWDMLNDLRNAAANSSAKLANKSTNLTENQKLYANAWCLPYLSAENCRWCLTDAIAEVPTSCCRGKSGGTIFYPSCGVRFELYPFRKTYESISWVPPSPTSPNSLAPPGKQKTKTIFEIIVPIIVLLVLLVLGYCCFLYRKERKSKHDILKESFGDDISTLESLQFEFAQIEAATNRFAAENRIGKGGFGEVYKGILSDGQEIAVKRLTRSSGQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEEEEKILIYEYVPNKSLDYFLFDLQKRKLLSWSQRQKIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVSIDQIEESTCTIVGTYGYISPEYAMHGYFSVKSDVYSFGIMVLEIISGKRKGCSAESECIDDIRRYAWTKWASQTPLELMDSSIEGTYSQEEVIKYIHIGLLCVQEDPDERPTMATIAFYLNSSSINLPSPLEPPYFKRSGNEENMAPNKESDNIGDSNNGITMTQFFPR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04072 665 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04072 665 SMART serkin_6 345 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04072 665 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Vivi1g04072 665 CDD STKc_IRAK 351 617 - -
Vivi1g04072 665 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 648 - -
Vivi1g04072 665 FunFam cysteine-rich receptor-like protein kinase 10 421 623 - -
Vivi1g04072 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vivi1g04072 665 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Vivi1g04072 665 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Vivi1g04072 665 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vivi1g04072 665 SUPERFAMILY Protein kinase-like (PK-like) 331 637 IPR011009 -
Vivi1g04072 665 Gene3D Transferase(Phosphotransferase) domain 1 421 623 - -
Vivi1g04072 665 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 306 420 - -
Vivi1g04072 665 Gene3D - 32 139 IPR038408 -
Vivi1g04072 665 Gene3D - 149 252 IPR038408 -
Vivi1g04072 665 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Vivi1g04072 665 Pfam Salt stress response/antifungal 160 250 IPR002902 -
Vivi1g04072 665 MobiDBLite consensus disorder prediction 642 665 - -
Vivi1g04072 665 ProSiteProfiles Protein kinase domain profile. 345 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04072 665 MobiDBLite consensus disorder prediction 632 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04072 Vivi-Chr1 86650331 86653432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04072 25 636 Receptor kinase-like Gene Family AT4G05200 46.709 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04072 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04072 - - gmx:100793219 930.243