Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04063 ATGGTTTCCAACACCAAATTACACATCTTCTTCTTTTTAACCCTTTTTATTATCTTCGTTAGTTTTGCAACAAACTCTTATGCAGACGACCCTCGTTTCCTCTACCAAGTTTGCTCAAAATACAGATTCATATCCAACAGCACCTACCAAACAAATCTCCATACCCTCTTATCTTCCTTATCTTCCCAAGCAACCCAAAACACCCAATTCTTCAACAACACCGTAACTAGCAAAAACCATTCAGAGCCTGCTTACGGACTATACAAGTGCAGAGGTGACGTCCCTTCCTCTCTATGCTCATCATGCGTAGAAAACGCAACCCAAAGCCTCTCCACAAACACAGAGTGTTCATTTTCTGTTGCAGCAGTTATATACTACGATGAGTGCATGGTTCGGTATTCAAACCATTCGTTCTTCTCAACCGTTACTTTAGCAGCTGGCTATGTTCTCGCAAGTCCAACGAATATGTCGAACAAAGAAAGCTTCAACCGTTTGTTGTATGAGACGTTGAACAAGACTGCAGACGAAACTTCTGTGAAGAAATTTGCAACAAGAGAAGCGAAAATAAATATATTTCAGAATCTTTATTGCTTGGCTCAGTGTACACCTGATATTGATGAAAGACAGTGTAGAAGCTGTCTTGATGGTTTGATAAATTCGGATCTTCCACGGTGCTGTGCAGGAGCGCAAGGTGGACAAGTTGTGTATCCTAATTGTGTTATCAGGTTTGAGATTTACCCTTTTTACCGTTCTCTTACTACGCCACCAACACCAGCTCCGGTTTCATCGGCAAAAACCGCAGTTGGTCAGGAGAGTACCACTTTGGAGGGATTACAATTTGATTTAGCTATCATTGCTGCGGCAACGAACAATTTCTCCCATGACAACAAGATTGGAAAAGGTGGATTTGGACAAGTTTACAAGGGCACTCTTCGTGATGGACGAGATATAGCTGTTAAAAGGCTTTCAACAAGTTCCACACAAGGTTCAACCGAGTTCAAAAATGAGATTTTATTGATAGCTAAGTTACAACATAGAAATCTTGTGGCTTTGATAGGTTTTTGTCTAGAGGAGCAAGAGAAGATTCTCATCTATGGATATGTCCCAAATGGAAGTCTTGATTATTATCTATTCGGTAACCAAGAACAAAAGTTAAGTTGGTCAGAGCGATATAAAATTATAGAAGGAATTGCTTTAGGAGTTCTTTATTTGCATGAATATTCTCGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAACGCCTGAGTCCTAAAATTTCAGATTTTGGCATGGCTAGAATAGTTAACATTGATCAAGATCGTGGTATAACCAAGAGAATTGTGGGAACATATGGTTATATGTCTCCCGAGTATGCAATGCTTGGAGATTTTTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTATTGAGATAATCATTGGAAAAAGGAATGCAGAGTCTTATGAATCAAATCATGATGGTAAAGGCCTCTTGAGTTATGTTTGGAGACAATGGCATGTAGAAACATTGTTGACTACATTGGATCCATATATTAAAGAAAAATATTCTCAAATAGAACTCATAAAATGCATTCAAATTGGTCTATTATGCGTCCAAGAAAATCCAAATGCAAGACCTACAATGGCAAGAGTGGTTTCATATCTCACTAATCACTCAATTAAACTTCCATCTCCACAAGAACCAGCTTATTTGTCGTATGGAATGGATCAAATTAGTGTTGCACAACAGGGGTCTAGCTCGGGTCAATCTGCTAGTAGTTCTAAACCATATTCAGTTAATAACATGTCAATAAGTATATCTATTCCTCGTTAA 1857 0.3802 MVSNTKLHIFFFLTLFIIFVSFATNSYADDPRFLYQVCSKYRFISNSTYQTNLHTLLSSLSSQATQNTQFFNNTVTSKNHSEPAYGLYKCRGDVPSSLCSSCVENATQSLSTNTECSFSVAAVIYYDECMVRYSNHSFFSTVTLAAGYVLASPTNMSNKESFNRLLYETLNKTADETSVKKFATREAKINIFQNLYCLAQCTPDIDERQCRSCLDGLINSDLPRCCAGAQGGQVVYPNCVIRFEIYPFYRSLTTPPTPAPVSSAKTAVGQESTTLEGLQFDLAIIAAATNNFSHDNKIGKGGFGQVYKGTLRDGRDIAVKRLSTSSTQGSTEFKNEILLIAKLQHRNLVALIGFCLEEQEKILIYGYVPNGSLDYYLFGNQEQKLSWSERYKIIEGIALGVLYLHEYSRLKVIHRDLKPSNILLDERLSPKISDFGMARIVNIDQDRGITKRIVGTYGYMSPEYAMLGDFSEKSDVFSFGVMVIEIIIGKRNAESYESNHDGKGLLSYVWRQWHVETLLTTLDPYIKEKYSQIELIKCIQIGLLCVQENPNARPTMARVVSYLTNHSIKLPSPQEPAYLSYGMDQISVAQQGSSSGQSASSSKPYSVNNMSISISIPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04063 618 Gene3D Transferase(Phosphotransferase) domain 1 368 573 - -
Vivi1g04063 618 CDD STKc_IRAK 298 565 - -
Vivi1g04063 618 Pfam Protein kinase domain 293 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04063 618 FunFam Cysteine-rich receptor-like protein kinase 25 147 248 - -
Vivi1g04063 618 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Vivi1g04063 618 ProSiteProfiles Protein kinase domain profile. 292 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04063 618 Gene3D - 30 138 IPR038408 -
Vivi1g04063 618 Gene3D - 145 248 IPR038408 -
Vivi1g04063 618 SMART serkin_6 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04063 618 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Vivi1g04063 618 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 258 367 - -
Vivi1g04063 618 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 615 - -
Vivi1g04063 618 FunFam cysteine-rich receptor-like protein kinase 10 368 570 - -
Vivi1g04063 618 SUPERFAMILY Protein kinase-like (PK-like) 277 594 IPR011009 -
Vivi1g04063 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Vivi1g04063 618 ProSiteProfiles Gnk2-homologous domain profile. 144 248 IPR002902 -
Vivi1g04063 618 Pfam Salt stress response/antifungal 41 135 IPR002902 -
Vivi1g04063 618 Pfam Salt stress response/antifungal 155 245 IPR002902 -
Vivi1g04063 618 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04063 Vivi-Chr1 86306168 86316235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04063 13 618 Receptor kinase-like Gene Family AT4G05200 44.065 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04063 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04063 - - vun:114191422 774.237