Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04062 ATGGTTTCCAACACCAAATTACACATCTTCTTCTTTTTAACCCTTTTTATTATCTTCGTTAGTTTTGCAACAAACTCTTATGCAGACGACCCTCGTTTCCTCTACCAAGTTTGCTCAAAATACAGATTCATATCCAACAGCACCTACCAAACAAATCTCCATACCCTCTTATCTTCCTTATCTTCCCAAGCAACCCAAAACACCCAATTCTTCAACAACACCGTAACTAGCAAAAACCATTCAGAGCCTGCTTACGGACTATACAAGTGCAGAGGTGACGTCCCTTCCTCTCTATGCTCATCATGCGTAGAAAACGCAACCCAAAGCCTCTCCACAAACACAGAGTGTTCATTTTCTGTTGCAGCAGTTATATACTACGATGAGTGCATGGTTCGGTATTCAAACCATTCGTTCTTCTCAACCGTTACTTTAGCAGCTGGCTATGTTCTCGCAAGTCCAACGAATATGTCGAACAAAGAAAGCTTCAACCGTTTGTTGTATGAGACGTTGAACAAGACTGCAGACGAAACTTCTGTGAAGAAATTTGCAACAAGAGAAGCGAAAATAAATATATTTCAGAATCTTTATTGCTTGGCTCAGTGTACACCTGATATTGATGAAAGACAGTGTAGAAGCTGTCTTGATGGTTTGATAAATTCGGATCTTCCACGGTGCTGTGCAGGAGCGCAAGGTGGACAAGTTGTGTATCCTAATTGTGTTATCAGGTTTGAGATTTACCCTTTTTACCGTTCTCTTACTACGCCACCAACACCAGCTCCGGTTTCATCGGCAAAAACCGCAGAAAGTAAAAATGGAAGATCTCGAACAGCAATCATTGTTGTAATACCCATTGTTGTTTTGGCAATAGTCTTTGCTACATGTTTCTACTGTCTAAAGAGAAAAGCTAGAAAAAGCAGGGCCAACATTCTCCTCCAAGAAAACTTTGGTCAGGAGAGTACCACTTTGGAGGGATTACAATTTGATTTAGCTATCATTGCTGCGGCAACGAACAATTTCTCCCATGACAACAAGATTGGAAAAGGTGGATTTGGACAAGTTTACAAGGGCACTCTTCGTGATGGACGAGATATAGCTGTTAAAAGGCTTTCAACAAGTTCCACACAAGGTTCAACCGAGTTCAAAAATGAGATTTTATTGATAGCTAAGTTACAACATAGAAATCTTGTGGCTTTGATAGGTTTTTGTCTAGAGGAGCAAGAGAAGATTCTCATCTATGGATATGTCCCAAATGGAAGTCTTGATTATTATCTATTCGGTAACCAAGAACAAAAGTTAAGTTGGTCAGAGCGATATAAAATTATAGAAGGAATTGCTTTAGGAGTTCTTTATTTGCATGAATATTCTCGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAACGCCTGAGTCCTAAAATTTCAGATTTTGGCATGGCTAGAATAGTTAACATTGATCAAGATCGTGGTATAACCAAGAGAATTGTGGGAACATATGGTTATATGTCTCCCGAGTATGCAATGCTTGGAGATTTTTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTATTGAGATAATCATTGGAAAAAGGAATGCAGAGTCTTATGAATCAAATCATGATGGTAAAGGCCTCTTGAGTTATGTTTGGAGACAATGGCATGTAGAAACATTGTTGACTACATTGGATCCATATATTAAAGAAAAATATTCTCAAATAGAACTCATAAAATGCATTCAAATTGGTCTATTATGCGTCCAAGAAAATCCAAATGCAAGACCTACAATGGCAAGAGTGGTTTCATATCTCACTAATCACTCAATTAAACTTCCATCTCCACAAGAACCAGCTTATTTGTCGTATGGAATGGATCAAATTAGTGTTGCACAACAGGGGTCTAGCTCGGGTCAATCTGCTAGTAGTTCTAAACCATATTCAGTTAATAACATGTCAATAAGTATATCTATTCCTCGTTAA 1998 0.3789 MVSNTKLHIFFFLTLFIIFVSFATNSYADDPRFLYQVCSKYRFISNSTYQTNLHTLLSSLSSQATQNTQFFNNTVTSKNHSEPAYGLYKCRGDVPSSLCSSCVENATQSLSTNTECSFSVAAVIYYDECMVRYSNHSFFSTVTLAAGYVLASPTNMSNKESFNRLLYETLNKTADETSVKKFATREAKINIFQNLYCLAQCTPDIDERQCRSCLDGLINSDLPRCCAGAQGGQVVYPNCVIRFEIYPFYRSLTTPPTPAPVSSAKTAESKNGRSRTAIIVVIPIVVLAIVFATCFYCLKRKARKSRANILLQENFGQESTTLEGLQFDLAIIAAATNNFSHDNKIGKGGFGQVYKGTLRDGRDIAVKRLSTSSTQGSTEFKNEILLIAKLQHRNLVALIGFCLEEQEKILIYGYVPNGSLDYYLFGNQEQKLSWSERYKIIEGIALGVLYLHEYSRLKVIHRDLKPSNILLDERLSPKISDFGMARIVNIDQDRGITKRIVGTYGYMSPEYAMLGDFSEKSDVFSFGVMVIEIIIGKRNAESYESNHDGKGLLSYVWRQWHVETLLTTLDPYIKEKYSQIELIKCIQIGLLCVQENPNARPTMARVVSYLTNHSIKLPSPQEPAYLSYGMDQISVAQQGSSSGQSASSSKPYSVNNMSISISIPR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04062 665 Gene3D Transferase(Phosphotransferase) domain 1 415 620 - -
Vivi1g04062 665 Gene3D Phosphorylase Kinase; domain 1 299 414 - -
Vivi1g04062 665 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04062 665 SUPERFAMILY Protein kinase-like (PK-like) 324 641 IPR011009 -
Vivi1g04062 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vivi1g04062 665 FunFam cysteine-rich receptor-like protein kinase 10 415 617 - -
Vivi1g04062 665 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Vivi1g04062 665 ProSiteProfiles Protein kinase domain profile. 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04062 665 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 662 - -
Vivi1g04062 665 Pfam Salt stress response/antifungal 41 135 IPR002902 -
Vivi1g04062 665 Pfam Salt stress response/antifungal 155 245 IPR002902 -
Vivi1g04062 665 CDD STKc_IRAK 345 612 - -
Vivi1g04062 665 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vivi1g04062 665 SMART serkin_6 339 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04062 665 ProSiteProfiles Gnk2-homologous domain profile. 144 248 IPR002902 -
Vivi1g04062 665 Gene3D - 145 248 IPR038408 -
Vivi1g04062 665 Gene3D - 30 138 IPR038408 -
Vivi1g04062 665 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 299 414 - -
Vivi1g04062 665 FunFam Cysteine-rich receptor-like protein kinase 25 147 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04062 Vivi-Chr1 86306168 86316235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04062 13 665 Receptor kinase-like Gene Family AT4G05200 44.363 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04062 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04062 - - vun:114191422 833.558