Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04060 ATGATTACCAAAATATTAGCAAAGAATCTAACACTCCAAATTCTTCTTCTCACCACTCTTACCTTAACCATAACAAAAACCTCTGCATCTGTCTTCAACAACGTTACCTGCACAAACACAAAAACATTCTCACCAAACACCACTTTCCATTCAAATCTCAAAACCCTTCTCTCCTCCCTCTCTTCCAACGTAATCAACGATGTTAGATTCTTCAACACAACATCCGGAAACGGTTCAGACAAAGTCTACGGTCTCTACATGTGTCGTGGAGATGTTCCATTCGCTTTATGCAGAGAGTGTGTTGGTTTTGCGACGCTTAAGATTCCATCATCGTGTCCTTCTTCAAAAGAAGCTGTTATCTGGTACAACGAGTGTTTATTAAGATATTCATATAGATTCATTTTCTCCAAAATGGAAACATGGCCTAGGTACAAGATCGAGATTCCAATGGGAGACCCTGGTTTGTTACATAGTAGAGGCTTTTATGCTGGTTTGAGATCTGTTTTGAATGAACTTCCGAAAGAAGCTGCGGTTTCTCTTTCTGGTTTTAACAAATATGCTGTTAAGCAAGAAAATGCTTCTGATAGTGTGACGCTTTATGGTCTTGCTCAGTGTACGCCGGACTTGTCGACCGGTGACTGTAGGCGGTGCGTCGGTGATGCAGTGGATGAGTTTCCTAAGACTTGTTGTGGTGGTAGCATAGGTGAAACTGTTTTGTTTCCGAGTTGTTTTGTTAGGTATGAGACATATCCGTTTTATCAGCATTCGGGAACTTCTGCATCGATATCAACTTCAGTTAATGGAGGAAGAAATATTCCAACACATGTGACTGCCATCATTGCTATTTTGGTTGTCATTTTGGTGGCGATTTCTTGCATTGGCTGCTGTTTGTTATGGATCAAATCGAAGAAGAGACGCAAAGCCAGCAAACCCAGTGACAGAGAAAATCTTGTGCTCGAATTTAATAACTCGGAGTCACTGGAATTCGATTTTGCTACAATTGAAATAGCAACAGATATGTTTTCTGATGATAGCAAAATAGGCAGAGGTGGATATGGACAAGTTTTCAAGGGAATTCTTTCTAGTGGACAAGAAATAGCTGTGAAGAGGTTGTCCAAAACATCAGGTCAAGGAGCAGAAGAATTCAAAAATGAAGTCATGTTAATAGCCAAACTTCAACACAGAAATTTGGTGAGGTTAATCGGATTTTGCCTTGAAGAACAAGAAAAGATACTTATCTATGAATATGTGCCTAACAAAAGTCTTGATCACTTCCTATTTGATTCAAAGAAGCAAAAACCATTAACTTGGCCCGAACGGTTTAGTATCATAAAAGGGATTGCTCGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTCAAGATTATACATCGTGATATCAAACCAAGCAATGTTCTTCTAGATAACAATATGATTCCAAAAATATCTGATTTTGGCATGGCAAGGATGGTAGATATAGAGCAAATTCAAGGACATACAAATAGAGTTGTGGGCACATACGGTTACATGTCTCCGGAATATGCAATGCACGGACAATTTTCAGTGAAGTCAGATGTTTTCAGTTTTGGAGTTATGGTTCTTGAGATTATCAGCGGAAAAAAGAATTCTTGTACATTTGAATCATGTCGTATTGACGATCTACTGAGTTATGCTTGGAACCAATGGAAAGGTGAGTCCCCATTTGAGATGTTGGATCCAATAATGCAAGAATCATATGCTCCAAATGAAGTAGAAAAGTGTGTGCAAATTGGTTTATTGTGTGTCCAAGAAAATCCAGATGATAGGCCTACGATGGGAACAATTGTTTCATATCTTAATAATGTCTCAATTGAAATGCCATTTCCTATGGAACCAGCATTTTTCATGCATGGCAGAACAAGAAGAAATTCAGCTGATCAATCATATTCAGGTCACTCCACCAACCACTCTTTCTCCTCAAGTGTACGCCCTCGATAG 1977 0.39 MITKILAKNLTLQILLLTTLTLTITKTSASVFNNVTCTNTKTFSPNTTFHSNLKTLLSSLSSNVINDVRFFNTTSGNGSDKVYGLYMCRGDVPFALCRECVGFATLKIPSSCPSSKEAVIWYNECLLRYSYRFIFSKMETWPRYKIEIPMGDPGLLHSRGFYAGLRSVLNELPKEAAVSLSGFNKYAVKQENASDSVTLYGLAQCTPDLSTGDCRRCVGDAVDEFPKTCCGGSIGETVLFPSCFVRYETYPFYQHSGTSASISTSVNGGRNIPTHVTAIIAILVVILVAISCIGCCLLWIKSKKRRKASKPSDRENLVLEFNNSESLEFDFATIEIATDMFSDDSKIGRGGYGQVFKGILSSGQEIAVKRLSKTSGQGAEEFKNEVMLIAKLQHRNLVRLIGFCLEEQEKILIYEYVPNKSLDHFLFDSKKQKPLTWPERFSIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMIPKISDFGMARMVDIEQIQGHTNRVVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKKNSCTFESCRIDDLLSYAWNQWKGESPFEMLDPIMQESYAPNEVEKCVQIGLLCVQENPDDRPTMGTIVSYLNNVSIEMPFPMEPAFFMHGRTRRNSADQSYSGHSTNHSFSSSVRPR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04060 658 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vivi1g04060 658 Gene3D Phosphorylase Kinase; domain 1 301 416 - -
Vivi1g04060 658 MobiDBLite consensus disorder prediction 638 658 - -
Vivi1g04060 658 FunFam Cysteine-rich receptor-like protein kinase 10 301 416 - -
Vivi1g04060 658 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Vivi1g04060 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 651 - -
Vivi1g04060 658 FunFam cysteine-rich receptor-like protein kinase 10 417 619 - -
Vivi1g04060 658 Gene3D Transferase(Phosphotransferase) domain 1 417 620 - -
Vivi1g04060 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vivi1g04060 658 Pfam Protein tyrosine and serine/threonine kinase 345 612 IPR001245 GO:0004672|GO:0006468
Vivi1g04060 658 Gene3D - 156 252 IPR038408 -
Vivi1g04060 658 Gene3D - 30 133 IPR038408 -
Vivi1g04060 658 ProSiteProfiles Gnk2-homologous domain profile. 143 252 IPR002902 -
Vivi1g04060 658 CDD STKc_IRAK 347 614 - -
Vivi1g04060 658 ProSiteProfiles Protein kinase domain profile. 341 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04060 658 SMART serkin_6 341 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04060 658 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 134 - -
Vivi1g04060 658 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Vivi1g04060 658 Pfam Salt stress response/antifungal 160 250 IPR002902 -
Vivi1g04060 658 SUPERFAMILY Protein kinase-like (PK-like) 326 641 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04060 Vivi-Chr1 86268519 86272323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04060 25 657 Receptor kinase-like Gene Family AT4G05200 44.939 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04060 PK_Tyr_Ser-Thr 4.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04060 - - mtr:25485264 1080.47