Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04059 ATGAATTCCTTCAACCTTCTATTTCTCTTCATCTTCCTCATCATCAACTCAACCACACAAGCACAGAACCCAACTTACCTCTTCCAATTCTGCACAAAAAACCAAACCAACTCCAACAGCCTCTACCACTCAATCCTCAAAACCCTTTTCTCTTCACTATCTTCCAACGCCACCAACAACAACGAATTCTACAACACCACAATCCCTAGCAAAAACCCTTCAAACACTGCATACGGTCTATTCATGTGCAGAGGCGACGTTTCCTCTCCCCTCTGCCAACAATGCGTCGCAAACGCAACACAAAAACTATCCACAGACACAGATTGTTCCTCATCCAAACAGGCTGTTATCTGGTACGACGAGTGCATGGTTCGATACTCCAACACCTCTTTTTTCTCCACCGTCACTACAAGTCCAGCTTTTTACCTAGTAAGCACCGCTAATATAACGAACCAGGAAAGCTTCATGAGTTTGTTGTCTGTTACTATGAACGAATCAGCAGATAAAGCAGCTGCGAATTCTTCTGTCGGTACTAAGAAATATGCTACAAAGGAAGCTAGAATCTCTGGGTTTCAGACGCTGTACAGTATGGCTCAGTGTACAGACGATTTATCTTCACAAGATTGCAGTACGTGTCTTAGTGTTGCCATTGCAAATCTTCCACAGTGTTGTAATGGAAAGACGGGAGGAAGAGTTTTAGTTCCTAGCTGTAACATTAGATATGAATTGTACCCTTTTTATAGAAACATTGCTCCCTCGCCAGCGCCTTCAGCACCACCAGTGATTGTTCCTCCAACAACCAATTCTAATTTGGGAGGAAGTAGTGGGATCTCATTAGGGACAATTGTTGCAATTGTGGTTCCAATTACAGTGGCTGCGCTGCTATTTATCATAGGAATTTGTTTCTTATGTATAAGAGGGTGGAAGAAGAAGCATGACTCTGCTGCAGCACAGGATCCGAAAACTGAAATCGATATTACCACAGTGGAATCCTTGAGATTTGATTTGAATACACTTGAAGAAGCCACCAACAAATTCTCAGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGCGAGGTTTACAAGGGCGTGCTTCCGAGCCGACAACAAATAGCTGTCAAGAGACTCTCTAAACAGTCGGGACAAGGTGGAGAACAATTTAAGAATGAAGTTGAACTGGTTGCACAACTTCAACATAGAAATTTAGCGAGGCTTCTTGGGTTTTGCTTGGAAAGAGAAGAAAAGATACTAGTTTATGAGTTTGTAGCCAACAAAAGTCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGGTTGTTGCATTGGACAAGGCGTTACAAGATTATTGGAGGGATTGCTCGGGGCATTCAATATCTTCATGAAGACTCTAGGCTTAAAATTATTCATCGTGATCTCAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCTGATTTTGGCATGGCAAAATTATTTGGAGTGGATCAAACTAAAGGAAATACCAGTAGGATTGTAGGGACATATGGTTACATGTCTCCGGAGTATGCAATGCATGGAAATTTCTCTAGTAAGTCTGATGTATATAGTTTCGGAGTTCTCATCATGGAGATTATAAGTGGCAAGAAGAACAGCTCTTTCTATGAAACAGGAGCTGCTGAGGATTTAGCGAGCTATGCGTGGAAACTTTGGAACAATGGAACGCCTTTGAAATTGGTGGACCACACAATAAGAGAATCCTATACTCCAAATGAAGCTATAAGATGCATCCATATTGGTTTATTATGTGTCCAAGAAGATCCAGATGATAGACCTACAATGCCAACAATAGTGCTCATGCTAGATAGTCACACTGTTACTCTACCAGTACCGAAGCAGCCTGCATTTTTTCTACAGAGTGGAGCTGATCAGCAGATGCCAACAATACAGATTAGTCAATCTGATAACAATTGA 1962 0.4123 MNSFNLLFLFIFLIINSTTQAQNPTYLFQFCTKNQTNSNSLYHSILKTLFSSLSSNATNNNEFYNTTIPSKNPSNTAYGLFMCRGDVSSPLCQQCVANATQKLSTDTDCSSSKQAVIWYDECMVRYSNTSFFSTVTTSPAFYLVSTANITNQESFMSLLSVTMNESADKAAANSSVGTKKYATKEARISGFQTLYSMAQCTDDLSSQDCSTCLSVAIANLPQCCNGKTGGRVLVPSCNIRYELYPFYRNIAPSPAPSAPPVIVPPTTNSNLGGSSGISLGTIVAIVVPITVAALLFIIGICFLCIRGWKKKHDSAAAQDPKTEIDITTVESLRFDLNTLEEATNKFSEANKLGEGGFGEVYKGVLPSRQQIAVKRLSKQSGQGGEQFKNEVELVAQLQHRNLARLLGFCLEREEKILVYEFVANKSLDYILFDPEKQRLLHWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKASNILLDGDMNPKISDFGMAKLFGVDQTKGNTSRIVGTYGYMSPEYAMHGNFSSKSDVYSFGVLIMEIISGKKNSSFYETGAAEDLASYAWKLWNNGTPLKLVDHTIRESYTPNEAIRCIHIGLLCVQEDPDDRPTMPTIVLMLDSHTVTLPVPKQPAFFLQSGADQQMPTIQISQSDNN 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04059 653 FunFam cysteine-rich receptor-like protein kinase 10 422 624 - -
Vivi1g04059 653 Gene3D Transferase(Phosphotransferase) domain 1 422 624 - -
Vivi1g04059 653 FunFam Cysteine-rich receptor-like protein kinase 25 139 246 - -
Vivi1g04059 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 638 - -
Vivi1g04059 653 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vivi1g04059 653 Pfam Salt stress response/antifungal 148 244 IPR002902 -
Vivi1g04059 653 Pfam Salt stress response/antifungal 31 128 IPR002902 -
Vivi1g04059 653 ProSiteProfiles Gnk2-homologous domain profile. 137 246 IPR002902 -
Vivi1g04059 653 Pfam Protein tyrosine and serine/threonine kinase 349 615 IPR001245 GO:0004672|GO:0006468
Vivi1g04059 653 FunFam Cysteine-rich receptor-like protein kinase 10 308 421 - -
Vivi1g04059 653 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Vivi1g04059 653 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 24 130 - -
Vivi1g04059 653 ProSiteProfiles Gnk2-homologous domain profile. 24 131 IPR002902 -
Vivi1g04059 653 SMART serkin_6 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04059 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vivi1g04059 653 SUPERFAMILY Protein kinase-like (PK-like) 331 637 IPR011009 -
Vivi1g04059 653 ProSiteProfiles Protein kinase domain profile. 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04059 653 CDD STKc_IRAK 352 618 - -
Vivi1g04059 653 Gene3D - 137 246 IPR038408 -
Vivi1g04059 653 Gene3D - 23 131 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04059 Vivi-Chr1 86240096 86243869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04059 2 653 Receptor kinase-like Gene Family AT4G05200 53.163 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04059 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04059 - - mtr:25485264 1019.61