Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04057 ATGCTTTCTTCGCGTTGTCTTGTGTTTTTACTTCTTCCTCTTTTTTTCACACTAAACTCTGAAGCCAACGACCAACTAATTTTCCGCAACCACAAATGTAACAATGATCTCGGAAACTTCACCGGCGATAGTGCCTACCCAAACAACCGTGCCATCGTTCTACAAAATATATATTCCGACAGAGAAATTGACTACGGGTTCTACAATTTCTCATACGGCAAAGATCCCGACATAGTAAACGCAATCGGATTCTGCAGAGGAGACGTTAATCCAAATGACTGTCGTGACTGCTTGAAATCCTCTGCAGTACTTCTCACAGAACGGTGTCCAGTACAGAAAGAGGCAATTGGTTACTACGACTTGTGCACCTTGCGCTATTCTAACGCTTCAATTTTCGGTGTCATGAATAGTAATGGTTATGTTTACAATAGCCAAAATAAGACAGTGGTGGATGATGCATTTAATCAAACACTTAGTGGCTTGTTGGATGAACTTAAAAGCGCAGCGGCAGAAGGTGATTGGCGGAAGAAGTTTGGTGAAAAGAGTGTTAAAGTAAATGAACTGAATACTAAGAATGAGACTATATATGGGTTGGTTCAGTGTACACCAGATTTGACAAAACAAAATTGTACTAAATGTTTGGATTTGGCTTTTGGTGATCTTTCATATTGGTGTAAAGAAATGAAAGATGGTTTGTATCTTGGACCGAGTTGTTCGGCTAGATATGATATATTTCAGTTTTATAAGTCCATAGTTAACAATACAGAGTCACCAGCACCACAACCTTCTTCCCAAGCAATTTCTCCTAAACCTTCCTCAATTATCTCTGTCACCAAGAATTCTACTGCCACTACTACTACCACTACCACTAAAGGAAAGAAGAGGAAATTAAGAACGGCCATCGCTATCGTTTTAGCATGTGTTGTAGCTGGCATACTAGTTGTTGGTGGATGTATTTATTGTGAAAGGAGAAAGCCAAAACCCGAATATACTGCTGAAATTGAAGTCCAAGAGACATATGAAGATGAAGATGAAGATGAAGTTAGAGCTGGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCATCAAATTAGCTACAAGCAACTTTTCTGATGAAAATGCGCTTGGTCAAGGGGGATTTGGAACTGTTTATAAGGGTACACTCGATGGACTTGATGTTGCTATCAAAAGATTGGCTAACAATTCTAAGCAAGGAGAAACAGAATTCAAGAATGAAGTATTACTTACGGGGAAGCTTCAACATCGAAATTTAGTTAAACTACTAGGTTTTTGTTTACATAGAGGAGAAAGATTGCTAATATACGAGTTTGTCCCCAATAAAAGTCTCGACTATATCATATTTGATCCAATTAAACGTGCAAATTTAAATTGGGAAAGACGCTTCAAAATCATTAAAGATATTGCTCGTGGTCTTCTTTATCTTCACGAAGATTCTCGACTACAAATTGTTCACCGTGATCTCAAAACAAGTAATATTCTACTTGATAATGAAATGAATCCAAAAATTACAGATTTTGGCATTGCAAAGTTGTTTGCCCCCAATCAAACTCATGGCATGACAAGTACAGTTATTGGAACTTATGGATATATGGCTCCGGAGTATATCAAACATGGAGAATTCTCAATCAAATCAGATGTATTCAGCTTTGGTGTAATTATATTGGAAATTGTCTGCGGTCGGAGAAACATTAAGTTTCGTGATGGGGAGAATATAAAAGATCTATTAGACAATGCATGGGAAAATTGGAAGACAGGGACAAGTTTAGATATTGTAGATCCAATGTTAGACCAAAGTTTTAATAAGAATGAAAAGATGAGATGCATTCATGTTGGATTACTGTGTGTTCAAGAAGATGTAGATGTGAGACCAACTATGAGTTCTGTTTTACTAATGCTTAGTAGCACATCTTTCCCACTTCCAGAACCTTCAGAACCTCCATTTTTAATGCAACCCAAAAGAGCATTATCTATATCATTGAGTGACCAGTATTCAGGTCCTACAAGGTCAAGTGATTCAGGATCAGGAAGTCAATTTACTCAAGGATCAACAACTAAGTCCTCAGTTACAGATCAATAA 2112 0.3736 MLSSRCLVFLLLPLFFTLNSEANDQLIFRNHKCNNDLGNFTGDSAYPNNRAIVLQNIYSDREIDYGFYNFSYGKDPDIVNAIGFCRGDVNPNDCRDCLKSSAVLLTERCPVQKEAIGYYDLCTLRYSNASIFGVMNSNGYVYNSQNKTVVDDAFNQTLSGLLDELKSAAAEGDWRKKFGEKSVKVNELNTKNETIYGLVQCTPDLTKQNCTKCLDLAFGDLSYWCKEMKDGLYLGPSCSARYDIFQFYKSIVNNTESPAPQPSSQAISPKPSSIISVTKNSTATTTTTTTKGKKRKLRTAIAIVLACVVAGILVVGGCIYCERRKPKPEYTAEIEVQETYEDEDEDEVRAGNDLKVGDLLQFDFETIKLATSNFSDENALGQGGFGTVYKGTLDGLDVAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLHRGERLLIYEFVPNKSLDYIIFDPIKRANLNWERRFKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDNEMNPKITDFGIAKLFAPNQTHGMTSTVIGTYGYMAPEYIKHGEFSIKSDVFSFGVIILEIVCGRRNIKFRDGENIKDLLDNAWENWKTGTSLDIVDPMLDQSFNKNEKMRCIHVGLLCVQEDVDVRPTMSSVLLMLSSTSFPLPEPSEPPFLMQPKRALSISLSDQYSGPTRSSDSGSGSQFTQGSTTKSSVTDQ 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04057 703 Pfam Salt stress response/antifungal 149 243 IPR002902 -
Vivi1g04057 703 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Vivi1g04057 703 Pfam Protein kinase domain 375 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04057 703 FunFam Cysteine-rich receptor-like protein kinase 10 335 448 - -
Vivi1g04057 703 FunFam cysteine-rich receptor-like protein kinase 10 449 651 - -
Vivi1g04057 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Vivi1g04057 703 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 113 695 - -
Vivi1g04057 703 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Vivi1g04057 703 ProSiteProfiles Gnk2-homologous domain profile. 135 247 IPR002902 -
Vivi1g04057 703 ProSitePatterns Protein kinases ATP-binding region signature. 380 401 IPR017441 GO:0005524
Vivi1g04057 703 Gene3D - 137 247 IPR038408 -
Vivi1g04057 703 Gene3D - 26 130 IPR038408 -
Vivi1g04057 703 Gene3D Transferase(Phosphotransferase) domain 1 449 649 - -
Vivi1g04057 703 SMART serkin_6 374 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04057 703 SUPERFAMILY Protein kinase-like (PK-like) 359 680 IPR011009 -
Vivi1g04057 703 ProSiteProfiles Protein kinase domain profile. 374 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04057 703 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Vivi1g04057 703 MobiDBLite consensus disorder prediction 671 703 - -
Vivi1g04057 703 Gene3D Phosphorylase Kinase; domain 1 335 448 - -
Vivi1g04057 703 CDD STKc_IRAK 380 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04057 Vivi-Chr1 86208389 86211883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04057 36 691 Receptor kinase-like Gene Family AT4G21410 42.643 1.49e-172 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04057 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04057 - - tpra:123882259 998.808