Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04056 ATGATCATGAATTCCTTCAACCTTCTATTCATGTTCTTCCTCACAAATTTTCTCCTAACCTCAACCATTACAGCCACCACCCCCACTTACCTCTTCCAATTCTGCACAAAAAATCAAACCAACCCCAACAGCGTCTACCACTCAAAACTCAAAACCCTTTTCTCTTCACTATCATCCAACGCCACTAACAACCATGAATTCTACAACACCACAATTCCTAGCAAAAACCCTTCCAACACAGCATACGGCCTTTTCATGTGCAGAGGCGACGTTTCCTCTAACCTCTGTCAACAATGCGTCGCAAACGCAACACAGACACTATCAACAGACTCAGATTGTTCCTCATCCAAACAAGCTGTTATCTGGTACGACGAGTGCATGGTTCGATACTCCAACACCTCCTTTTTCTCCACCGTCGCTACACGTCCAGGTGTTTTCCTAGTGAACTCTGCTAATATAACAAACCAGGAAAGCTTCAATAGTTTGTTGTCTGTTACTATGAAGGAATCAGCAGATAAAGCAGCTGCGAATTCTTCTGTTGGTGCTAAGAAATATGCTACAAAGGAAGCTAGTATCTCTGGATTTCAGACGCTGTACAGTTTGGCTCAGTGTACAGACGATTTATCTTCACAAGATTGCAGTTCTTGTCTTAGTGATGCCATTGGATATCTTCCACAGTGCTGTGATGGAAAACAAGGAGGAAGAGTTTTATTTCCTAGCTGTAATATTAGGTATGAATTGTACCCTTTTTATACAAACATTACTCCCTCACCACCGCCTTCAACATCACCAGCGTCTCCGGTACCTCCAGGGATTCTTTCACCAACAAGCACTCCTAATTTTGGAGGTAGTAATGGAATCTCATCAAGGACAATTGTTGCAATTGTGGTTCCAATTACAGTGGTCACGCTGCTATTTATCGTAGGAATTTGTTTCTTATGTATAAGAAGGGGGAAGAAGAAGCATGACTCTGCAGCACAAGAACCAAAAACTGAAACTGATATAACTACTGTGGAATCCTTGAGATTTGATTTGAGTACACTTGAAGACGCTACAAACAAATTCTCAGAAGCTAATAAGCTAGGAGAAGGTGGATTTGGTGAGGTTTACAAGGGCGTGCTTCCGAGCGGACAACAAATTGCTGTCAAGAGACTCTCTAAACACTCGGGACAAGGTGGAGAACAATTTAAGAATGAAGTTGAACTGGTTGCACAGCTTCAACATAGAAATTTGGCTAGGCTTCTGGGATTTTGCTTGGAAAGAGAAGAGAAGATACTAGTTTATGAATTTGTAGCCAACAAAAGTCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGGCTATTGGATTGGACAAGACGTTACAAGATTATTGGAGGGATCGCTCGAGGCATTCAATATCTTCATGAAGATTCAAGGCTTAAAATAATTCATCGGGATCTCAAAGCTAGCAACGTATTGTTGGATAAAGATATGAATCCAAAAATCTCTGATTTTGGTTTGGCAAAATTATTTGGAGTGGATCAAACTCAAGGAAATACCAGCAGGATTGTAGGGACATATGGTTACATGTCTCCGGAGTATGCAATGCATGGAGATTTCTCTATTAAGTCTGATGTATACAGTTTTGGAATCCTCGTTATGGAGATTATAAGTGGCAAGAAGAACAGCTCTTTCTATGAAACAGGTGTTGCCGAGGATTTAATTTCCTATGCGTGGAATCTTTGGAAGAATGGAACACCTTTGGAATTGGTAGACCACACAATAAGAGAATCCTATACTCCAAATGAAGCTATAAGATGCATCCATATTGGTTTATTATGTGTCCAAGAAGATCCAGACGATAGACCTACAATGGCAACAATAGTGCTTATGCTAGATAGTCACACTGTTACTCTACCGGTACCGATGCAGCCTGCATTTTTTCTACAAAGTGGAGCTGATCAGCACATGCCTACAATACAGATTAGTCAATCTGATACCCGTTGA 1989 0.4067 MIMNSFNLLFMFFLTNFLLTSTITATTPTYLFQFCTKNQTNPNSVYHSKLKTLFSSLSSNATNNHEFYNTTIPSKNPSNTAYGLFMCRGDVSSNLCQQCVANATQTLSTDSDCSSSKQAVIWYDECMVRYSNTSFFSTVATRPGVFLVNSANITNQESFNSLLSVTMKESADKAAANSSVGAKKYATKEASISGFQTLYSLAQCTDDLSSQDCSSCLSDAIGYLPQCCDGKQGGRVLFPSCNIRYELYPFYTNITPSPPPSTSPASPVPPGILSPTSTPNFGGSNGISSRTIVAIVVPITVVTLLFIVGICFLCIRRGKKKHDSAAQEPKTETDITTVESLRFDLSTLEDATNKFSEANKLGEGGFGEVYKGVLPSGQQIAVKRLSKHSGQGGEQFKNEVELVAQLQHRNLARLLGFCLEREEKILVYEFVANKSLDYILFDPEKQRLLDWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKASNVLLDKDMNPKISDFGLAKLFGVDQTQGNTSRIVGTYGYMSPEYAMHGDFSIKSDVYSFGILVMEIISGKKNSSFYETGVAEDLISYAWNLWKNGTPLELVDHTIRESYTPNEAIRCIHIGLLCVQEDPDDRPTMATIVLMLDSHTVTLPVPMQPAFFLQSGADQHMPTIQISQSDTR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04056 662 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Vivi1g04056 662 FunFam Cysteine-rich receptor-like protein kinase 10 317 430 - -
Vivi1g04056 662 ProSiteProfiles Gnk2-homologous domain profile. 28 135 IPR002902 -
Vivi1g04056 662 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 28 134 - -
Vivi1g04056 662 FunFam Cysteine-rich receptor-like protein kinase 25 143 250 - -
Vivi1g04056 662 Gene3D Phosphorylase Kinase; domain 1 316 430 - -
Vivi1g04056 662 SUPERFAMILY Protein kinase-like (PK-like) 340 648 IPR011009 -
Vivi1g04056 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vivi1g04056 662 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 651 - -
Vivi1g04056 662 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04056 662 Pfam Salt stress response/antifungal 152 248 IPR002902 -
Vivi1g04056 662 Pfam Salt stress response/antifungal 35 132 IPR002902 -
Vivi1g04056 662 Gene3D Transferase(Phosphotransferase) domain 1 431 633 - -
Vivi1g04056 662 FunFam cysteine-rich receptor-like protein kinase 10 431 633 - -
Vivi1g04056 662 Gene3D - 145 250 IPR038408 -
Vivi1g04056 662 Gene3D - 27 135 IPR038408 -
Vivi1g04056 662 Pfam Protein tyrosine and serine/threonine kinase 358 625 IPR001245 GO:0004672|GO:0006468
Vivi1g04056 662 ProSiteProfiles Gnk2-homologous domain profile. 141 250 IPR002902 -
Vivi1g04056 662 CDD STKc_IRAK 361 627 - -
Vivi1g04056 662 SMART serkin_6 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04056 Vivi-Chr1 86172297 86175967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04056 9 660 Receptor kinase-like Gene Family AT4G05200 55.945 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04056 PK_Tyr_Ser-Thr 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04056 - - mtr:25485264 1044.26