LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g04055	ATGTTTCAGCTCCTCTTTCTCTTCGTCTGCCTTACCTCAATAACTTCAACATCATCATCACTATCTCCAACTTACAATGATATTTACTGTCCAAACAACACAACCTTCGATTCCAACAACAAAACAATACTCAAATCAAATCTCAATGTCCTCCTCTCCTCTCTCGTCACCAACGCCACGCTAGGCGGAGCGGATTTTTACTCAACCTTCATGGGATTGGGAACAACCAACGTTGTCAACGGTGTTTTCCTCTGCCGTGGTGACATTAACTCCACCATGTGCCAGAGTTGTATAACCACCGCAGCTAGAGATATTACACGCCTCTGTCCTAACAAAACGGAGTCGATTATATGGTATGACGAATGCATGCTGCGTTACACTAATCGTTACTTTAGCCCCACGAGTATCGTCCCAAGAGCGAATTTGAACAACGGAAAGAACATCACTTCCTCGAAATTGGATACCTTTAATGGAAAGTTGTTAAGTTTCTTGGATAGATTGGCTACAGAAGCTGCAAATTCTCAGACTACGGAGCAATTCGCGACTGGAGAAGATAACTTCAACTTAAGCATAAGCAGCTCTTTGGTTTATGGGTTGGCGCAGTGTGTCAATGGATTGACGAAGGTTGAGTGTGAGGGGTGTTTAGTAAATGCGTCGAGAACTCTTCTTACATGTTGTGAAGGAAAACAAGGTGCTAGAGCTCTTCTTGCATGGTGTAATATCAGATATGATTCCTACAAGTTTTACAATACAACCGATGATTCATCTTCGCTTCCTCCTCCTTCCGGAAAGAACAAGTCCGGGTCAAAAACAAGAACGGTCTTGATTGTTGTCATTGTTACCGGGTCAATAATTCTGTTATGTTTAGGCTGCTATTTCCTCATGAGAAGATTAGCTTGGAAGAAATATAAAACTCTTATGAGAGAAAATTTTGGTGATGAAAGTGCGGCGTTAGAGTCACTGCAATATAGTTTAGCGACAGTTGAAGCAGCCACAAAGAAATTTTCATCAGAGAATAAAATAGGCAAGGGGGGATTTGGAGAGGTTTACAAGGGTATTCTTATAGATGGAAGGCAAATAGCTGTGAAAAAGCTATCACTGAGTTCAGGACAAGGTGCAGTAGAGTTCATAAATGAGGTTTTACTAATAGCCAAACTTCAGCATAGAAATTTGGTAACCTTAGTAGGCTTTTGCTTGGAAGACCAAGAGAAAATGCTCATTTACGAATACGTGCCCAACAAAAGTCTCGATTACTTTCTATTTGATCGTAACAAGACTAGATTACTACAGTGGTTTGAACGTTATAAAATCATCGAAGGAATTGCACATGGCATACATTATCTACACAACCATTCAAGGTTGAAGATTATTCATCGAGATCTTAAACCTAGTAATGTATTGTTAGATGATAATATGAATCCTAAAATATCTGATTTCGGCATGGCAAGATTGGTTGCCCTAGATCAAGATCAGGGAAGTACAAACAGAATTGTTGGAACATATGGCTATATGTCTCAAGAATATGCAATGCATGGACAATTTTCAGAAAAATCAGACGTATTCAGTTTTGGAGTCATAATTTTGGAGATAATTAGTTCAAAAAGGAATGCCCGTTCTCTTTTATCAGATAGTGACGATGACCTATTGAGCCATGCTTGGAAACAATGGATGAATCATACACCATTAGAACTAGTAGACCAAGATATAAAAGAATCATGCAACCATAGTGAATTGGTTAAGTGTATTCAAATTGGATTATTATGTGTTCAAGAGAAACCTGATGATAGACCTACAATGGCAACAATTGTTTCGTATCTCACTAGCCCTTCCGCGGAGTTGCCATTTCCAAGAGAGCTGACAGAGTCTATGCGCAGTGGAATACTGCAAAAGATTGTAAGAGAAGGGTTTAGTTCGACTTCTATATCAACATTCAATGAAATAAGTACATCAGTAAGTTCTGCATTTTCTGCCACTGCTTAG	1980	0.3934	MFQLLFLFVCLTSITSTSSSLSPTYNDIYCPNNTTFDSNNKTILKSNLNVLLSSLVTNATLGGADFYSTFMGLGTTNVVNGVFLCRGDINSTMCQSCITTAARDITRLCPNKTESIIWYDECMLRYTNRYFSPTSIVPRANLNNGKNITSSKLDTFNGKLLSFLDRLATEAANSQTTEQFATGEDNFNLSISSSLVYGLAQCVNGLTKVECEGCLVNASRTLLTCCEGKQGARALLAWCNIRYDSYKFYNTTDDSSSLPPPSGKNKSGSKTRTVLIVVIVTGSIILLCLGCYFLMRRLAWKKYKTLMRENFGDESAALESLQYSLATVEAATKKFSSENKIGKGGFGEVYKGILIDGRQIAVKKLSLSSGQGAVEFINEVLLIAKLQHRNLVTLVGFCLEDQEKMLIYEYVPNKSLDYFLFDRNKTRLLQWFERYKIIEGIAHGIHYLHNHSRLKIIHRDLKPSNVLLDDNMNPKISDFGMARLVALDQDQGSTNRIVGTYGYMSQEYAMHGQFSEKSDVFSFGVIILEIISSKRNARSLLSDSDDDLLSHAWKQWMNHTPLELVDQDIKESCNHSELVKCIQIGLLCVQEKPDDRPTMATIVSYLTSPSAELPFPRELTESMRSGILQKIVREGFSSTSISTFNEISTSVSSAFSATA	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g04055	659	CDD	STKc_IRAK	341	607	-	-
	Vivi1g04055	659	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	23	131	-	-
	Vivi1g04055	659	Pfam	Protein tyrosine and serine/threonine kinase	338	606	IPR001245	GO:0004672\|GO:0006468
	Vivi1g04055	659	ProSiteProfiles	Gnk2-homologous domain profile.	136	248	IPR002902	-
	Vivi1g04055	659	SMART	serkin_6	335	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04055	659	ProSiteProfiles	Protein kinase domain profile.	335	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04055	659	Gene3D	Phosphorylase Kinase; domain 1	299	410	-	-
	Vivi1g04055	659	ProSitePatterns	Protein kinases ATP-binding region signature.	341	364	IPR017441	GO:0005524
	Vivi1g04055	659	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	28	620	-	-
	Vivi1g04055	659	Pfam	Salt stress response/antifungal	151	246	IPR002902	-
	Vivi1g04055	659	Pfam	Salt stress response/antifungal	30	128	IPR002902	-
	Vivi1g04055	659	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	296	410	-	-
	Vivi1g04055	659	SUPERFAMILY	Protein kinase-like (PK-like)	320	618	IPR011009	-
	Vivi1g04055	659	ProSiteProfiles	Gnk2-homologous domain profile.	24	131	IPR002902	-
	Vivi1g04055	659	Gene3D	-	138	248	IPR038408	-
	Vivi1g04055	659	Gene3D	-	24	131	IPR038408	-
	Vivi1g04055	659	Gene3D	Transferase(Phosphotransferase) domain 1	411	614	-	-
	Vivi1g04055	659	FunFam	cysteine-rich receptor-like protein kinase 10	411	613	-	-
	Vivi1g04055	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g04055	Vivi-Chr1	86133620	86136764	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g04055	5	634	Receptor kinase-like Gene Family	AT4G05200	44.513	0.0	537

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi1g04055		PK_Tyr_Ser-Thr	4.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g04055	-		-	vvo:131648390	989.949