LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g04054	ATGCTTCTGCTACCCTTTCTGTTCGTGTTCCTTACCGTAATAACTTCAATAACATCATCACTATCTCCAACTTACAATGATATTTACTGTCCAAACAACGCAACCTTCGAATCCAACAACAACACAATACTCAAATCAAATCTCAATGTCCTCCTCTCCTCTCTCGTCACCAACGCCACGAAAGGCGGCGCTGATTTCTACTCAACCTTCATGGGTTTGGGAACAACCAACGTTGTCAACGGTGTTTTCCTCTGCCGCGGTGACGTTAACTCCACCATGTGTCAGAATTGTGTAACCACCGCAGCTACAGATATTACACGCCTCTGTCCTAACAAAACGGAGTCCATTATATGGTATGACGAATGCATGCTGCGTTACACTAATCGTTACTTTAGCCCCACCAGTATCGTGCCAAGAGCAAATTTGAACGATGACAAGAACATCGCTACCTTCAATTTGGATACCTTTAATGGATTGTTGTTGAGTTTCTTGGATACGTTGGCTGCAGAAGCTGCAAATTCTCTGACAGCGAAGCAATTCGCGACTGGAGAAGAGATCTTCGACTTCAGAAAGAGCAACTCTTCGGTTTATGGGTTGGCGCAGTGTGTCACGGGATTGACGAATGTTCAGTGTGAGGAATGTTTGGTAAATGCGTCGAGAACTCTTCTTACATGTTGTGAAGGAAAACAAGGTGCTAGAGCTCTTCTTGCATGGTGTAATATCAGATATGATTCCTACAAGTTTTACAATACAACTGGTGTTTCATCTTCACTTCCTCCTCCTTCTTCCGAAAATAACAAGTCGGCGTCAAAAACGGTCTTGATTGTTGTTATCGTTACCGGGTCAACAATCCTGTTATGTTTAGGCTGCTATTTCCTCATCAAAAGATCAGCTTGGAAGAAATATAAAACTCTTATGAGAGAAAATTTTGGTGATGAAAGTGCGGCGTTACAGTCACTGCAGTATAGTTTAGCCACAGTTGAAGCAGCCACAAAGAAATTTTCATCAGAGAATAAAATTGGCAGGGGAGGATTTGGAGAGGTTTACAAGGGAATTCTTATAAATGGAAAACAAATAGCTGTGAAAAAGCTATCTCAGAGTTCAGGACAAGGTGGAGTAGAGTTCATAAATGAGGTTTTACTAATAGCCAAACTTCAACATAGAAACTTGGTAACCTTAACAGGTTTTTGCTTGGAAGACCAAGAGAAAATGCTCATTTACGAATACGTGCCCAACAAAAGTCTCGATTACTTTTTATTTGATCGCAACAAGACTAGATTACTACACTGGTTTGAACGTTATAAAATCATCGAAGGAATTGCACATGGCATACATTATCTACACAACCATTCAAGGTTGAAGATTATTCATCGAGATCTCAAACCTAGTAATGTATTGTTAGATGATAATATGAATCCTAAGATATCTGATTTCGGCATGGCAAGATTGGTCGCCCTAGATCAAGACCGGGGAAGTACAAATAGAATCGTTGGAACATATGGCTATATGTCTCAAGAATATGCAATGCATGGACAATTTTCAGAAAAATCAGACGTATTCAGTTTTGGAGTCATGATTTTGGAGATCATTAGTTCAAAAAGAAATGCTCGTTCTCTTTTATCAGATAGGGATGATGACCTCTTGAGTCATGCTTGGAAACAATGGATGAATCATACACCATTAGAACTAGTAGACCAAGATATAAAAGAATCATGCAACCATAGTGAATTGGTTAAGTGTATTCAAATTGGTTTATTATGTGTTCAAGAGAAACCTGATGATAGACCTACAATGGCAACCGTTGTTTCGTATCTCACTAGCCTTTCAGCAGAGTTGCCATTTCCAAGAGAGCTGACAGAGTCCATGCACAGTAGAATACTGCCAAAGATCGTAGGAGGGGAGTTTAGTTCGGCTTCTATATCAACTTTCAATGGAAAAAGTTCATCAGTAAGTTCTGCATTTTCTGCCAGTGCTTAG	1977	0.3996	MLLLPFLFVFLTVITSITSSLSPTYNDIYCPNNATFESNNNTILKSNLNVLLSSLVTNATKGGADFYSTFMGLGTTNVVNGVFLCRGDVNSTMCQNCVTTAATDITRLCPNKTESIIWYDECMLRYTNRYFSPTSIVPRANLNDDKNIATFNLDTFNGLLLSFLDTLAAEAANSLTAKQFATGEEIFDFRKSNSSVYGLAQCVTGLTNVQCEECLVNASRTLLTCCEGKQGARALLAWCNIRYDSYKFYNTTGVSSSLPPPSSENNKSASKTVLIVVIVTGSTILLCLGCYFLIKRSAWKKYKTLMRENFGDESAALQSLQYSLATVEAATKKFSSENKIGRGGFGEVYKGILINGKQIAVKKLSQSSGQGGVEFINEVLLIAKLQHRNLVTLTGFCLEDQEKMLIYEYVPNKSLDYFLFDRNKTRLLHWFERYKIIEGIAHGIHYLHNHSRLKIIHRDLKPSNVLLDDNMNPKISDFGMARLVALDQDRGSTNRIVGTYGYMSQEYAMHGQFSEKSDVFSFGVMILEIISSKRNARSLLSDRDDDLLSHAWKQWMNHTPLELVDQDIKESCNHSELVKCIQIGLLCVQEKPDDRPTMATVVSYLTSLSAELPFPRELTESMHSRILPKIVGGEFSSASISTFNGKSSSVSSAFSASA	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g04054	658	Gene3D	Transferase(Phosphotransferase) domain 1	410	617	-	-
	Vivi1g04054	658	Gene3D	Phosphorylase Kinase; domain 1	296	409	-	-
	Vivi1g04054	658	ProSiteProfiles	Gnk2-homologous domain profile.	24	131	IPR002902	-
	Vivi1g04054	658	ProSitePatterns	Protein kinases ATP-binding region signature.	340	363	IPR017441	GO:0005524
	Vivi1g04054	658	SMART	serkin_6	334	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04054	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Vivi1g04054	658	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	23	131	-	-
	Vivi1g04054	658	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	295	409	-	-
	Vivi1g04054	658	ProSiteProfiles	Gnk2-homologous domain profile.	136	248	IPR002902	-
	Vivi1g04054	658	Gene3D	-	24	131	IPR038408	-
	Vivi1g04054	658	Gene3D	-	140	248	IPR038408	-
	Vivi1g04054	658	Pfam	Protein tyrosine and serine/threonine kinase	337	605	IPR001245	GO:0004672\|GO:0006468
	Vivi1g04054	658	ProSiteProfiles	Protein kinase domain profile.	334	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04054	658	Pfam	Salt stress response/antifungal	154	246	IPR002902	-
	Vivi1g04054	658	Pfam	Salt stress response/antifungal	30	128	IPR002902	-
	Vivi1g04054	658	CDD	STKc_IRAK	340	608	-	-
	Vivi1g04054	658	SUPERFAMILY	Protein kinase-like (PK-like)	319	619	IPR011009	-
	Vivi1g04054	658	FunFam	cysteine-rich receptor-like protein kinase 10	410	612	-	-
	Vivi1g04054	658	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	37	619	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g04054	Vivi-Chr1	86111447	86114179	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g04054	6	617	Receptor kinase-like Gene Family	AT4G05200	44.674	1.09e-180	528

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi1g04054		PK_Tyr_Ser-Thr	9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g04054	-		-	vvo:131648390	971.844