Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04051 ATCACTGCAGCTACAAATATAACACGCCTATGTCCTAACAAAACGGAGTCAATTATATGGTTTGATGAATGCATGCTGCGTTACTCTAACCGGTATTTTAGTCCTACCAGTATCGTCCCAAGAGTGAATTTGAATAACGGGAAGAACATCACTACCTCAAAATTGGATAGCTTTAATGTAACGTTGATGAGTTTCTTGGATAAGTTGGCTACGGAAGCTGCAGATTCTCAGACAACAACGCAATTCGCGACTGGAGAAGATAACTTCAACTTAAGCATAAGCAGCTCTTCGGTTTATGGGTTGGCGCAGTGTGTCAATGGATTAACGAATGTCCAGTGTGAGGAATGTTTAGTAAATGCGGCGAGAACACTTCTGACTTGTTGTGAAGGAAAACAAGGTGCTAGAGCTCTTCTAGCATGGTGTAACATCAGATATGATTCCTACAAGTTCTACAATACAACAGATGTTTCATCTTCGCTTCCGCCTCCTTCTTCCGGAAAGAACAAGTCCGGGTCAAAATCAAGAATGGTCTTGATTGTTGTTATTGTTATCGGGTCAACAATTCTACTTTGTTTAGGCTGCTATTTCCTCATCAGAAGATCAGCTTGGAAGAAATATAAAACTCTTATGAGAGAAAATTTTGGTGATGAAAGTGCGGCGTTACAGTCACTGCAGTATAGTTTAGCCACAGTTGAAGCAGCCACGAAGAAATTTTCATCAGAGAATAAAATAGGCAGGGGAGGGTTTGGAGAGGTTTACAAGGGTATTCTTATAGATGGAAGGCAAATAGCTGTGAAAAAGCTATCTCTGAGTTCAGGACAAGGTGGAGTAGAGTTCATAAATGAGGTTTTACTAATAGCCAAACTTCAACATAGAAATTTGGTAACCTTAATAGGCTTTTGCTTGGAGGACCAAGAGAAAATGCTCATTTACGAATATGTGCCCAACAAAAGTCTTGATTACTTTCTATTTGATCCCAACAAGACTAGATTCCTACAGTGGTTTGAACGTTATAAGATCATCGAAGGAATTGCACATGGCATACATTATCTACACAACCATTCAAGGTTGAAGATTATTCATCGTGATCTCAAACCAAGTAATCTGTTGTTAGATGATAATATGAATCCTAAAATATCTGATTTCGGCATGGCAAGAATGGTCGCTCTAGATCAAGATCGGGGAAGTACAAACAGAATTGTTGGAACATATGGCTATATGTCTCAAGAATATGCAATGTATGGACAATATTCAGAAAAATCAGACGTATTTAGTTTTGGAGTCATAATTTTGGAGATAATTAGTTCAAAAAGGAATGCTCGTTCTCTTTTATCAGATAGCGACGATGACCTATTGGGTCATGCTTGGAAACAATGGATGAATCAAACACCATTAGAACTAGTAGACCAAGATATAAAAGAATCATGCAACCATAGTGAAGTGGTTAGGTGTATTCAAATTGGTTTATTATGTGTTCAAGAGAAACCTGATGATAGACCTACAATGGCAACAGTTGTTTCGTATCTCACTAGCCTTTCTGCGGAGTTGCCATTTCCGAGAGAGCTGACGGAGTCTATGCACAGTGGAATACTGCTAAAGATAGTAGGAGGGGAGTTTAGTTCGACTTCTATATCAACTTTCAATGGAATAAGTCCATCAGTAAGTTCTGCATTCTCTGCCACTGTTTAG 1689 0.3884 ITAATNITRLCPNKTESIIWFDECMLRYSNRYFSPTSIVPRVNLNNGKNITTSKLDSFNVTLMSFLDKLATEAADSQTTTQFATGEDNFNLSISSSSVYGLAQCVNGLTNVQCEECLVNAARTLLTCCEGKQGARALLAWCNIRYDSYKFYNTTDVSSSLPPPSSGKNKSGSKSRMVLIVVIVIGSTILLCLGCYFLIRRSAWKKYKTLMRENFGDESAALQSLQYSLATVEAATKKFSSENKIGRGGFGEVYKGILIDGRQIAVKKLSLSSGQGGVEFINEVLLIAKLQHRNLVTLIGFCLEDQEKMLIYEYVPNKSLDYFLFDPNKTRFLQWFERYKIIEGIAHGIHYLHNHSRLKIIHRDLKPSNLLLDDNMNPKISDFGMARMVALDQDRGSTNRIVGTYGYMSQEYAMYGQYSEKSDVFSFGVIILEIISSKRNARSLLSDSDDDLLGHAWKQWMNQTPLELVDQDIKESCNHSEVVRCIQIGLLCVQEKPDDRPTMATVVSYLTSLSAELPFPRELTESMHSGILLKIVGGEFSSTSISTFNGISPSVSSAFSATV 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04051 562 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Vivi1g04051 562 ProSiteProfiles Protein kinase domain profile. 238 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04051 562 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 199 313 - -
Vivi1g04051 562 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 522 - -
Vivi1g04051 562 SUPERFAMILY Protein kinase-like (PK-like) 223 522 IPR011009 -
Vivi1g04051 562 Gene3D Phosphorylase Kinase; domain 1 201 313 - -
Vivi1g04051 562 Pfam Salt stress response/antifungal 53 148 IPR002902 -
Vivi1g04051 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Vivi1g04051 562 CDD STKc_IRAK 244 512 - -
Vivi1g04051 562 Gene3D Transferase(Phosphotransferase) domain 1 314 520 - -
Vivi1g04051 562 SMART serkin_6 238 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04051 562 FunFam cysteine-rich receptor-like protein kinase 10 314 516 - -
Vivi1g04051 562 ProSiteProfiles Gnk2-homologous domain profile. 38 150 IPR002902 -
Vivi1g04051 562 Gene3D - 1 33 IPR038408 -
Vivi1g04051 562 Gene3D - 41 150 IPR038408 -
Vivi1g04051 562 Pfam Protein kinase domain 239 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04051 Vivi-Chr1 86098078 86100327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04051 3 533 Receptor kinase-like Gene Family AT4G05200 46.055 1.98e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04051 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04051 - - vvo:131648390 1096.26