Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04050 ATGGCAATTGTTACTAGCAAGTTATTATTTTCCCTTTATTCTCTTCTCCTTCTTTTTATTGTATCTCTAACCAAAGCCCAGTCAAATTTTTTGTACAACTTCTGTCTAAATGATAAAGGAAACTACACAACCAATAGCACATATCAAAACAATCTCAACACCCTTTTGTCTAATCTCACTTCCAACACACAAATCAACTACGGTTTCTACAATTTCTCCCACGGCCAAAACAACGACAAGGTTAACGCAATTGGACTCTGCAGAGGAGATGTTAAACCAGATGTTTGCCGCAGTTGTCTCAATGATTCAAGAGTTCTTCTCCCAAAGCTTTGTCCAAATCAAAAAGAAGCTATTGGTTGGTATGATAACTGCATGTTACGCTATTCGAACCGATCAATATTCGGTATTAATGAAGAATCACCTAGTTTTTATATGTGGAACTTAAACAACGCATCAGAGGTTGATCAATTTAATCAAGTTCTCGGGAACTTGATGACGAAATTGAAGGAAAAAGCAGCATCAAGTGATTCTCGTCGTAAGTTTGCCACGGATAATGACACTGATGTGAATTTTCAAACCATATACGGTCTTGTGCAGTGTACACCTGATTTGTCATATCAAGATTGTACTGATTGTTTAGAAGCTGCTATCTCAGAAATTCCTAGATGTTGTAATAACAAGAAAGGTGGGAGAGTTGTTAAACCAAGTTGTAATATTAGATATGAAAACTATCGCTTCTATGATCCCACACCTATATTAGATCCAGAAAAAACCTCTCCTCCACCACAAGAAAAAAGAAAATCATCCCATACCACCATCGCCATAGTAGTGCCTATTGTTGTCGCTGTTGTTGTTGCTGCTCTCCTAAGTTTCATTTGCATATGCTTAATGAGAAATAAGCGAAAGATGAATCATGAAGAAATAGAACACAATCACGATGATATTGAAATCGAGGAGTCGTTGCAATTCAATTTTGATACAATACAAGTTGCAACAAATAACTTTTCTGAAGCTAATAAACTCGGACATGGCGGATTTGGAATTGTTTATCAAGGAACACTCTCTACTGAACAAGTGATTGCAGTAAAACGGCTGTCAAAAGGTTCTGGTCAAGGAGATAGTGAATTTCAGAATGAAGTGCAATTATTGGCTAAACTTCAACATCGGAATTTAGTTCGACTACTTGGTTTTTGTTTAAAAGGAAAAGAAAGACTACTTATCTATGAATTTGTTCCTAATAAAAGCCTCGACTACTTTTTATTTGATCCACTAAAGAGAGCTCAATTAGACTGGGAAAGACGCTATAAAATTATTGAAGGTATTGTTAAAGGACTTCTTTACCTTCACGAGGATTCTCGACTTCGCATTATACATCGTGATCTTAAAGCAAGTAATATTCTCTTGGACAACAATATGAATCCTAAAATATCAGATTTTGGTATGGCCAGACTACTACTTGTTGATCAAACTCAAGTAAATACAGATAAAATCGTTGGAACATATGGATATATGGCTCCTGAATATGCAATGTTTGGACAATTTTCAATAAAATCAGATGTTTTTAGTTTTGGAGTACTAATTCTAGAGATTATAAGTGGCCTGAAAGTTTGTGGCATTCTTCATGAGCAGAGTATGGAAGACTTACTTAGCTTTGTGTGGAGAAACTGGAGGGAGGGTACAATCACAAATATAATTGATCCATCATTAAACAATAGTTCACAAAATGAAATAATGAGATGCATTCACATTGGTTTACTATGTGTTCAAGAAAAAGTGGTTGAAAGGCCAACTATGGCTACTATTGCACTCATGCTTAATAGTTATTCAGTCTCTTTACCGTTCCCTTTGGAGCCTGCATCTTTTATAGGAGGCAGAACTGGAAGTCTTTCAATTTCAGACATGCAATCTGGTGAAAATAGTGCAGGGATAATAAGGTCAAGTCAATCCAAGAGTATATCAACAAATGATGATTCAAGTGATGAGTTATCGGCATGTGGGTGA 2001 0.3598 MAIVTSKLLFSLYSLLLLFIVSLTKAQSNFLYNFCLNDKGNYTTNSTYQNNLNTLLSNLTSNTQINYGFYNFSHGQNNDKVNAIGLCRGDVKPDVCRSCLNDSRVLLPKLCPNQKEAIGWYDNCMLRYSNRSIFGINEESPSFYMWNLNNASEVDQFNQVLGNLMTKLKEKAASSDSRRKFATDNDTDVNFQTIYGLVQCTPDLSYQDCTDCLEAAISEIPRCCNNKKGGRVVKPSCNIRYENYRFYDPTPILDPEKTSPPPQEKRKSSHTTIAIVVPIVVAVVVAALLSFICICLMRNKRKMNHEEIEHNHDDIEIEESLQFNFDTIQVATNNFSEANKLGHGGFGIVYQGTLSTEQVIAVKRLSKGSGQGDSEFQNEVQLLAKLQHRNLVRLLGFCLKGKERLLIYEFVPNKSLDYFLFDPLKRAQLDWERRYKIIEGIVKGLLYLHEDSRLRIIHRDLKASNILLDNNMNPKISDFGMARLLLVDQTQVNTDKIVGTYGYMAPEYAMFGQFSIKSDVFSFGVLILEIISGLKVCGILHEQSMEDLLSFVWRNWREGTITNIIDPSLNNSSQNEIMRCIHIGLLCVQEKVVERPTMATIALMLNSYSVSLPFPLEPASFIGGRTGSLSISDMQSGENSAGIIRSSQSKSISTNDDSSDELSACG 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04050 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Vivi1g04050 666 Gene3D - 140 246 IPR038408 -
Vivi1g04050 666 Gene3D - 27 132 IPR038408 -
Vivi1g04050 666 SUPERFAMILY Protein kinase-like (PK-like) 318 605 IPR011009 -
Vivi1g04050 666 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Vivi1g04050 666 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Vivi1g04050 666 SMART serkin_6 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04050 666 MobiDBLite consensus disorder prediction 640 666 - -
Vivi1g04050 666 Gene3D Phosphorylase Kinase; domain 1 295 410 - -
Vivi1g04050 666 ProSiteProfiles Protein kinase domain profile. 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04050 666 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Vivi1g04050 666 FunFam cysteine-rich receptor-like protein kinase 10 411 612 - -
Vivi1g04050 666 Pfam Protein tyrosine and serine/threonine kinase 338 602 IPR001245 GO:0004672|GO:0006468
Vivi1g04050 666 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Vivi1g04050 666 Pfam Salt stress response/antifungal 150 244 IPR002902 -
Vivi1g04050 666 FunFam Cysteine-rich receptor-like protein kinase 10 141 246 - -
Vivi1g04050 666 CDD STKc_IRAK 341 606 - -
Vivi1g04050 666 FunFam Cysteine-rich receptor-like protein kinase 10 297 410 - -
Vivi1g04050 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vivi1g04050 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 656 - -
Vivi1g04050 666 Gene3D Transferase(Phosphotransferase) domain 1 411 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04050 Vivi-Chr1 86087648 86090536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04050 11 658 Receptor kinase-like Gene Family AT4G05200 49.102 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04050 PK_Tyr_Ser-Thr 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04050 - - gmx:100782800 813.527