Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04048 ATGGCCTACCTTCCCTTTCTTTGTTTTCTTTTTTTCATAATAATATCCCAAGCCAAAGCCGGAGATACTGTATCATGTGATAACAAAAGAGGCAACTACACAGCCAACAGCACCTACGACAACAACCTCAAAACCCTTATATCTAGTTTCTATTCTCATAAAGAAATTAACTACGGCTTCTACAATTTCTCGTATGGCCAGGATCCAAACAAAGTATACGCCATTGGAATGTGTAGTGGAGATCTTAAGCCCAATGAGTGTCTAACATACCTAAACAGTTCTTTTGCCGATCTTAGAGAGCAGTGTCCGAATCAAAAAGAGGCAATTGTATGGGGTGGGAGTTTAACTTTGTGGTACTCAAATCGCTCAATATTTAGGATAGTAGAAACTGACCCTACAGAGGGTTATGTATCTTCGGCTACTGCATCCAACGTGGACAAGTACAACGATGCACTGAATAAATTGATGACAAATCTTAAAGACAAAGCTGCATCAGGTGACTCCCGTCGTAAGTATGACGCAGATAGTGTGTATGAACCTGTAAATTTAGCAACTATATATGGAACTGTGCAGTGTGTGGCTGATTTGTCATCCCAACAATGTAATGATTGCTTGGATGTAGCAATTAAAGAAATTGCAACTTGTTGTAATGGCACGCTGGGACGACAAACTTTTAAACCAAGTTGCCGTCTTAGATATGAAACTTATAACTTCTACAATGCTACCATTGAATTAGACTCAGTTGCAACTCCACCATCACAATCCACAAACAACACTTCTTCAGGACACAACAAAACACATACTGTCATCGCCATAGCAGTGCCATCTGTTTTTGTGGTTTTGGTAGTTATTTTTATATGCTTCTGTTTGCGGGTGAGAAAGCCAGAACACATTTTTGAAGCTAACATTGAAGAATATGAAGACGACGAAGAAGATGAACTAATTGTTGTTGAGTCATTGCAATATAGCTTTGATACTATACTAGTTGCTACAAATCACTTTTCAAATTCAAATAAAATTGGGCATGGAGGATTTGGAGATGTTTATCGGGGTAAACTTTCTAATGGACAAATGATTGCGGTCAAAAGGTTATCAATAGATTCCTCTCAAGGAGACAAGGAATTTAAAAATGAAGTAACATTAGTAGCCAAACTTCAACATCGGAATTTAGTTAGGCTACTTGGTTTCAGTCTAGAAGGAAGAGAAAGACTACTTATTTATGAATTTATTGTAAATAAAAGTCTAGATTACTTCATATTCGACCCAACAAAGAAAGCACTATTGAATTGGGGAAAGCGCTACGAAATCATAAAAGGTATTGCACGAGGTCTTCTTTATCTTCACGAGGATTCTCGCCTGCGCATTATACATCGTGATCTCAAAGCAAGTAACATTCTCTTAAACATTGAGATGAATCCTAAAATAGCTGATTTTGGAATGGCAAAGTTGTTTGTTCTTGACCAAACTCAAGGAAATACTAATAGAATTGTTGGAACATATGGATATATGGCACCAGAATATGCAATGCACGGACAATTTTCTGTAAAATCAGATGTATTTAGTTTTGGAGTATTGGTTCTTGAGATAATAAGTGGTCATAAAAATAGTTCAAATATTTGTGTTGGAAATGATGTTGAGTACCTATTGAGTTATGCATGGAAAAGCTGGAAAGAGGGAAGAGCGACAAATATTATAGATCCATTATTAAAAAACATTTCACAAAATGAAATAATGAGATGCCTTCATATTGGTCTACTATGTCTTCAAGAAGAAGTAGAAGACAGACCAACCATGGCTAGTGTTGCACTCATGCTTAATAGTCATTCTATCACTCTATCAATACCTTCGAAACCCGCTTATTTTTATGGAAGTGAAACTAGAAGCTTACAAAATATGCAGATATCAGATGGAAATCCTGATGGATCAAAATCACATGAATCGATTAACGAGGCTTCAATTACTGATCCATACCCACGATAG 1980 0.3667 MAYLPFLCFLFFIIISQAKAGDTVSCDNKRGNYTANSTYDNNLKTLISSFYSHKEINYGFYNFSYGQDPNKVYAIGMCSGDLKPNECLTYLNSSFADLREQCPNQKEAIVWGGSLTLWYSNRSIFRIVETDPTEGYVSSATASNVDKYNDALNKLMTNLKDKAASGDSRRKYDADSVYEPVNLATIYGTVQCVADLSSQQCNDCLDVAIKEIATCCNGTLGRQTFKPSCRLRYETYNFYNATIELDSVATPPSQSTNNTSSGHNKTHTVIAIAVPSVFVVLVVIFICFCLRVRKPEHIFEANIEEYEDDEEDELIVVESLQYSFDTILVATNHFSNSNKIGHGGFGDVYRGKLSNGQMIAVKRLSIDSSQGDKEFKNEVTLVAKLQHRNLVRLLGFSLEGRERLLIYEFIVNKSLDYFIFDPTKKALLNWGKRYEIIKGIARGLLYLHEDSRLRIIHRDLKASNILLNIEMNPKIADFGMAKLFVLDQTQGNTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIISGHKNSSNICVGNDVEYLLSYAWKSWKEGRATNIIDPLLKNISQNEIMRCLHIGLLCLQEEVEDRPTMASVALMLNSHSITLSIPSKPAYFYGSETRSLQNMQISDGNPDGSKSHESINEASITDPYPR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04048 659 ProSiteProfiles Gnk2-homologous domain profile. 130 238 IPR002902 -
Vivi1g04048 659 SUPERFAMILY Protein kinase-like (PK-like) 315 605 IPR011009 -
Vivi1g04048 659 FunFam Cysteine-rich receptor-like protein kinase 10 133 238 - -
Vivi1g04048 659 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Vivi1g04048 659 Gene3D Transferase(Phosphotransferase) domain 1 411 614 - -
Vivi1g04048 659 Gene3D - 132 238 IPR038408 -
Vivi1g04048 659 Gene3D - 22 123 IPR038408 -
Vivi1g04048 659 MobiDBLite consensus disorder prediction 631 659 - -
Vivi1g04048 659 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 21 124 - -
Vivi1g04048 659 Gene3D Phosphorylase Kinase; domain 1 298 409 - -
Vivi1g04048 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vivi1g04048 659 ProSiteProfiles Protein kinase domain profile. 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04048 659 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vivi1g04048 659 MobiDBLite consensus disorder prediction 631 651 - -
Vivi1g04048 659 FunFam Cysteine-rich receptor-like protein kinase 10 298 409 - -
Vivi1g04048 659 CDD STKc_IRAK 340 606 - -
Vivi1g04048 659 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Vivi1g04048 659 Pfam Salt stress response/antifungal 143 236 IPR002902 -
Vivi1g04048 659 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 656 - -
Vivi1g04048 659 FunFam cysteine-rich receptor-like protein kinase 10 410 612 - -
Vivi1g04048 659 SMART serkin_6 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04048 659 Pfam Protein kinase domain 335 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04048 Vivi-Chr1 85965759 85973872 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04048 6 620 Receptor kinase-like Gene Family AT4G21410 49.294 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04048 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04048 - - mtr:11442310 859.366