Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04042 ATGGCAATTGTTTCTTGCAAGTTATTATTCTCCTTTTATTCTTTTCTCCTTCTTCTCGTTATTATTGTATCTCAAACCAATGCCCAGCCAGATTTTATATACAGATTTTGCATAAACGAGAAAGGAAACTACACAACCAATAGCACATATCAAAAAAACCTCAACACCCTTTTGTCTAATCTCACTTCCAACACACAAATCAACTACGGTTTCTACAATTTCTCCCATGGCCAAAATAACGATAAAGTAAACGCCATTGGCCTCTGCAGAGGAGATGTTACACCAGAAGTTTGCCACAATTGTCTCAACGATTCAAGACTTCTTCTCACAAAGCTCTGTCCTAATCAAAAAGAAGCTATGGCTGGGTATGACCTCTGCATGTTACGCTACTCGAACCGATCAATATTCGGTATCAAGGAAGATTCACCAGATTATCCTTTGTCGAACCCAGACAACGCATCAGAGGCGGATCAATTTAATCAAGTTCTCGGGAACTTGATGAGGAAATTGAAGAAAAAAGCTGCATCAAGTGATTCTAGTACTCTTAAGTTTGCGGCGGATAGTGACAGCACTGATATGAATTTTCAAACCATATACGGTCTTGTGCAGTGTACACCTGATTTGTCATCGCAAGATTGTAATGATTGTTTAGAAGCTGCTATCTCAGAAATTCCAACTTGTTGTTATAAGAAGGTTGGTGGGAGAGTTAATAAACCAAGTTGTAATATTAGATATGAAAACTATCGCTTCTACAATCTCACATCACATGGTTCACCACAAGAAAAATGCAAATCATCGCTTTCTACTATCGCCATAGTAGTGTCTGTTGTTGCTGTTGTTGTTGTTTCTGCTATGTTAAGTTTCTTTTGCATATATTTAATGAGAAGTAAGAAAAAGATAAAACGTGAAGAAATAGAACACGAACACGATGATATTGAAATTGTGGAGTCATTGCAATTCGACTTTGACACAATACAGGTTGCAACAAATAACTTTTCTGAAGATAATAAACTAGGACATGGTGGATTTGGTGTTGTTTATCAGGGTAAACTCGCTAATGGACAAGTGATTGCGGTTAAACGCTTGTCAAAAGGTTCTGGACAAGGAGATAGGGAATTTAAGAATGAAGTGCTTTTACTGGCTAAACTTCAACATCGAAATTTAGTTAAACTTCATGGTTTTTGTTTAGAAGGAAAAGAAAGACTACTTATCTATGAGTTTGTTCCTAATAAAAGCCTTGACTACTTTATATTTGATCCAATAAAGAGAACACAGTTAGATTGGGAAAGACTTTACAACATCATCAATGGTATTGTAAGAGGCCTTCTTTACCTTCATGAAGATTCTCGACTTCGTATTATTCATCGTGATCTTAAAGCAAGTAATATTCTCTTGGACAATAATATGAATCCTAAAATATCAGATTTTGGTTTGGCCAGACTAATACTTGTTGGTCAAACTCAAGGAAATACGGAAAAAATCGTTGGAACATATGGATATATGGCTCCTGAATATGCAATGTTTGGAAAATTTTCAATAAAATCAGATGTTTTTAGTTTTGGAGTACTAATTATAGAAATTATAACTGGCCAAAAAGTTACTGGCATTCTTCATGAGCAGAGTACGGAAGACTTACTTATGGAAGACTTACTTAGCTTTGTGTGGAGAAATTGGAGGGAGGGTACAATCATCAATATAATCGATCCATTATTAAACAGTAGTTCACAAAAAGAAATAATGAGATGCATTCAGATTAGTTTACTATGTGTTCAAGAAAAAGTGGTTGAAAGGCCAACTATGGCTACTATTGCACGCATGCTTAATAGTTATTCAGTCTCTTTACCGCTCCCTTTGGAGCCTGCATCTGTTATAGCAGGCAAACCTGGAAGTCACTCAATTTCAGACATGCAATCTGGTGAAGATAGTGAACGGATAATAAGGTCAAGTCAATCCAAGAATATATCAGCAAATGAGGATTCAAGTGATGAGTTATAG 1995 0.3604 MAIVSCKLLFSFYSFLLLLVIIVSQTNAQPDFIYRFCINEKGNYTTNSTYQKNLNTLLSNLTSNTQINYGFYNFSHGQNNDKVNAIGLCRGDVTPEVCHNCLNDSRLLLTKLCPNQKEAMAGYDLCMLRYSNRSIFGIKEDSPDYPLSNPDNASEADQFNQVLGNLMRKLKKKAASSDSSTLKFAADSDSTDMNFQTIYGLVQCTPDLSSQDCNDCLEAAISEIPTCCYKKVGGRVNKPSCNIRYENYRFYNLTSHGSPQEKCKSSLSTIAIVVSVVAVVVVSAMLSFFCIYLMRSKKKIKREEIEHEHDDIEIVESLQFDFDTIQVATNNFSEDNKLGHGGFGVVYQGKLANGQVIAVKRLSKGSGQGDREFKNEVLLLAKLQHRNLVKLHGFCLEGKERLLIYEFVPNKSLDYFIFDPIKRTQLDWERLYNIINGIVRGLLYLHEDSRLRIIHRDLKASNILLDNNMNPKISDFGLARLILVGQTQGNTEKIVGTYGYMAPEYAMFGKFSIKSDVFSFGVLIIEIITGQKVTGILHEQSTEDLLMEDLLSFVWRNWREGTIINIIDPLLNSSSQKEIMRCIQISLLCVQEKVVERPTMATIARMLNSYSVSLPLPLEPASVIAGKPGSHSISDMQSGEDSERIIRSSQSKNISANEDSSDEL 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04042 664 Pfam Salt stress response/antifungal 152 248 IPR002902 -
Vivi1g04042 664 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Vivi1g04042 664 FunFam Cysteine-rich receptor-like protein kinase 10 294 407 - -
Vivi1g04042 664 FunFam Cysteine-rich receptor-like protein kinase 10 143 250 - -
Vivi1g04042 664 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Vivi1g04042 664 Gene3D Transferase(Phosphotransferase) domain 1 408 614 - -
Vivi1g04042 664 ProSiteProfiles Protein kinase domain profile. 332 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04042 664 Gene3D - 29 134 IPR038408 -
Vivi1g04042 664 Gene3D - 145 250 IPR038408 -
Vivi1g04042 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 655 - -
Vivi1g04042 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 135 - -
Vivi1g04042 664 SUPERFAMILY Protein kinase-like (PK-like) 314 607 IPR011009 -
Vivi1g04042 664 CDD STKc_IRAK 338 608 - -
Vivi1g04042 664 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Vivi1g04042 664 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Vivi1g04042 664 ProSiteProfiles Gnk2-homologous domain profile. 141 250 IPR002902 -
Vivi1g04042 664 FunFam cysteine-rich receptor-like protein kinase 10 408 614 - -
Vivi1g04042 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vivi1g04042 664 SMART serkin_6 332 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04042 664 MobiDBLite consensus disorder prediction 627 664 - -
Vivi1g04042 664 Pfam Protein kinase domain 333 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04042 Vivi-Chr1 85734888 85738282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04042 7 624 Receptor kinase-like Gene Family AT4G21410 48.313 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04042 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04042 - - qsa:O6P43_031179 756.903