Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04041 ATGAAAACTATCGCTTCTACAATCTCACATCACATGGTTCACCACAAGGTTGCAACAAATAACTTTTCTGAAGATAATAAACTAGGACATGGTGGATTTGGTGTTGTTTATCAGGGTAAACTCGCTAATGGACAAGTGATTGCGGTTAAACGCTTGTCAAAAGGTTCTGGACAAGGAGATAGGGAATTTAAGAATGAAGTGCTTTTACTGGCTAAACTTCAACATCGAAATTTAGTTAAACTTCATGGTTTTTGTTTAGAAGGAAAAGAAAGACTACTTATCTATGAGTTTGTTCCTAATAAAAGCCTTGACTACTTTATATTTGATCCAATAAAGAGAACACAGTTAGATTGGGAAAGACTTTACAACATCATCAATGGTATTGTAAGAGGCCTTCTTTACCTTCATGAAGATTCTCGACTTCGTATTATTCATCGTGATCTTAAAGCAAGTAATATTCTCTTGGACAATAATATGAATCCTAAAATATCAGATTTTGGTTTGGCCAGACTAATACTTGTTGGTCAAACTCAAGGAAATACGGAAAAAATCGTTGGAACATATGGATATATGGCTCCTGAATATGCAATGTTTGGAAAATTTTCAATAAAATCAGATGTTTTTAGTTTTGGAGTACTAATTATAGAAATTATAACTGGCCAAAAAGTTACTGGCATTCTTCATGAGCAGAGTACGGAAGACTTACTTATGGAAGACTTACTTAGCTTTGTGTGGAGAAATTGGAGGGAGGGTACAATCATCAATATAATCGATCCATTATTAAACAGTAGTTCACAAAAAGAAATAATGAGATGCATTCAGATTAGTTTACTATGTGTTCAAGAAAAAGTGGTTGAAAGGCCAACTATGGCTACTATTGCACGCATGCTTAATAGTTATTCAGTCTCTTTACCGCTCCCTTTGGAGCCTGCATCTGTTATAGCAGGCAAACCTGGAAGTCACTCAATTTCAGACATGCAATCTGGTGAAGATAGTGAACGGATAATAAGGTCAAGTCAATCCAAGAATATATCAGCAAATGAGGATTCAAGTGATGAGTTATAG 1065 0.3502 MKTIASTISHHMVHHKVATNNFSEDNKLGHGGFGVVYQGKLANGQVIAVKRLSKGSGQGDREFKNEVLLLAKLQHRNLVKLHGFCLEGKERLLIYEFVPNKSLDYFIFDPIKRTQLDWERLYNIINGIVRGLLYLHEDSRLRIIHRDLKASNILLDNNMNPKISDFGLARLILVGQTQGNTEKIVGTYGYMAPEYAMFGKFSIKSDVFSFGVLIIEIITGQKVTGILHEQSTEDLLMEDLLSFVWRNWREGTIINIIDPLLNSSSQKEIMRCIQISLLCVQEKVVERPTMATIARMLNSYSVSLPLPLEPASVIAGKPGSHSISDMQSGEDSERIIRSSQSKNISANEDSSDEL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04041 354 SMART serkin_6 22 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04041 354 ProSiteProfiles Protein kinase domain profile. 22 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04041 354 FunFam Cysteine-rich receptor-like protein kinase 10 2 97 - -
Vivi1g04041 354 Gene3D Transferase(Phosphotransferase) domain 1 98 304 - -
Vivi1g04041 354 FunFam cysteine-rich receptor-like protein kinase 10 98 304 - -
Vivi1g04041 354 CDD STKc_IRAK 28 298 - -
Vivi1g04041 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 345 - -
Vivi1g04041 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vivi1g04041 354 Gene3D Phosphorylase Kinase; domain 1 4 97 - -
Vivi1g04041 354 ProSitePatterns Protein kinases ATP-binding region signature. 28 50 IPR017441 GO:0005524
Vivi1g04041 354 MobiDBLite consensus disorder prediction 317 354 - -
Vivi1g04041 354 SUPERFAMILY Protein kinase-like (PK-like) 9 297 IPR011009 -
Vivi1g04041 354 Pfam Protein kinase domain 23 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04041 Vivi-Chr1 85734880 85737512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04041 11 314 Receptor kinase-like Gene Family AT4G21410 65.359 3.59e-139 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04041 Pkinase 8.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04041 - - qsa:O6P43_031179 461.84