Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04040 ATGCCTCTCCTTTCCTTTCTTTGTTTTCTTTTTTTCATAATAGTTTCCCAAGCCAAAGTCAGAGGACTTGCATCATGTGATAACAACAGAGGCAACTACACAGCCAACAGCACCTACGACAACAACCTCAAAACCCTTATATCTAGTTTCTATTCTCATAAAGAAATTAACTACGGTTTCTACAATTTCTCGTATGGCCAGGATCCAAACAAAGTATATGCCATTGCAATGTGTAGTGGAGATCTTAACCCCAATGAGTGTCTAACATACCTAAACAGTTCTTTTACCGATCTTAGAGAGCAGTGTCCAAATCAAAAAGAGGCGATTGTTTGGAGTGGGAGTTTAACTTTGTGGTACTCTAATCGCTCAATATTTACGACAGTAGAATATAAACCTACAAAGGGTGTTGTAAATGGGGGAGTTGTACCCGACGTGGACAAGTTTAGCGAAGCACTGAATAAACTCTTGACAGATATTAAAGACAAAGCTGCAGCAGGTGACTCCCGTCTTAAATATGATGCAGCTAAGTATGAGAATGCAAATTTTAAGACTATATATGGTGCTGTGCAGTGTGTGCCTGATTTGTCATCGCAACAATGCATTGATTGCTTGGAAGATATAATTTCAGCAATTCCAATTTGTTGTAATGGCAGGAAAGGAGCACGAATTTATAAACCAAGTTGCCATCTTAGATATGAAATTTATAACTTCTCTAATGCTACCGTTGAGTTATACTCAGTTGCAAATCCACCATCACAATCCACCACTAACACTTCTTCATCAGGACACAACAAAACACGTACTGTCATCGCCATAGCTGTGCCATCTATTTTTGTGGTTTTGGTAGCTATTCTTATATGTTTCTGTTTGCGGGTGAGAAAACCAAAACACAGTTTTGAAGCTAACAATGAAGAATACGAAGACGATGGAGAAGATGAAATAATGGTTGTTGAGTCATTGCAATTTAGCTTTGATATCATACAAGTTGCTACAAATCACTTTTCAAATTCAAATAAAATTGGGCATGGAGGATTTGGAGATGTTTATCGGGGTAAACTTTCTAATGGACAAAAGATTGCGGTCAAAAGGTTATCAATAGATTCTGCTCAAGGAGACAGGGAATTTAAAAATGAAGTAACATTAGTAGCCAAACTTCAACATCGGAATTTAGTCAAGCTACTTGGTTTCAGTCTAGAAGGAAGAGAAAGATTACTTATTTATGAATTTGTTGTGAATAAAAGTCTAGATTACTTCATATTCGATCCGACAAAAAAAGCATTGTTGAATTGGGCCAATCGCTATGAAATCATAAGAGGTATTGCACGAGGTCTTCTTTATCTCCACGAGGATTCTCGCTTGCGTATTATTCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGACAGTGAGATGAATCCTAAAATAGCTGATTTTGGATTGGCAAAGTTGTTTGTTCTGGATCAAACTCAAGGAAATACTAATAGAATTGTTGGAACCTATGGATATATGGCACCAGAATATGCAATGCACGGACAATTTTCTGTAAAATCTGATGTATTTAGTTTTGGAATATTGATTCTTGAGATAATAAGTGGTCAGAAAAATAATATTTGCATTGGAAATGATGTTGAGTACCTACTAAGTTATGCATGGAAAAGCTGGAATGAGGGAAGAGCTACAAATATTATAGATCCATCATTACATAACATTTCACAAAATGAAATAATGAGATGCATTCATATTGGTTTACTATGTATTCAAGAAGAAGTGGAAGCCAGACCAACCATGGCTAGTGTTGCACTCATGCTTAATAGTCATTCTCTCACTCTTTCAATACCAACGAAACCCGCATATTTTTATGGAAGTGAAACTAGAAACTTACCAAATATCCAGATATCGGGTGGAAATCCTAGTGGATCACATGAATCGATTAACCAGGTTTCAATTACTGATCCATACCCGCGATAG 1968 0.3664 MPLLSFLCFLFFIIVSQAKVRGLASCDNNRGNYTANSTYDNNLKTLISSFYSHKEINYGFYNFSYGQDPNKVYAIAMCSGDLNPNECLTYLNSSFTDLREQCPNQKEAIVWSGSLTLWYSNRSIFTTVEYKPTKGVVNGGVVPDVDKFSEALNKLLTDIKDKAAAGDSRLKYDAAKYENANFKTIYGAVQCVPDLSSQQCIDCLEDIISAIPICCNGRKGARIYKPSCHLRYEIYNFSNATVELYSVANPPSQSTTNTSSSGHNKTRTVIAIAVPSIFVVLVAILICFCLRVRKPKHSFEANNEEYEDDGEDEIMVVESLQFSFDIIQVATNHFSNSNKIGHGGFGDVYRGKLSNGQKIAVKRLSIDSAQGDREFKNEVTLVAKLQHRNLVKLLGFSLEGRERLLIYEFVVNKSLDYFIFDPTKKALLNWANRYEIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDSEMNPKIADFGLAKLFVLDQTQGNTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGILILEIISGQKNNICIGNDVEYLLSYAWKSWNEGRATNIIDPSLHNISQNEIMRCIHIGLLCIQEEVEARPTMASVALMLNSHSLTLSIPTKPAYFYGSETRNLPNIQISGGNPSGSHESINQVSITDPYPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04040 655 Gene3D - 133 237 IPR038408 -
Vivi1g04040 655 Gene3D - 21 123 IPR038408 -
Vivi1g04040 655 ProSiteProfiles Gnk2-homologous domain profile. 130 237 IPR002902 -
Vivi1g04040 655 SUPERFAMILY Protein kinase-like (PK-like) 314 603 IPR011009 -
Vivi1g04040 655 FunFam Cysteine-rich receptor-like protein kinase 10 296 409 - -
Vivi1g04040 655 Pfam Protein tyrosine and serine/threonine kinase 337 600 IPR001245 GO:0004672|GO:0006468
Vivi1g04040 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vivi1g04040 655 Gene3D Phosphorylase Kinase; domain 1 297 409 - -
Vivi1g04040 655 FunFam cysteine-rich receptor-like protein kinase 10 410 610 - -
Vivi1g04040 655 CDD STKc_IRAK 340 604 - -
Vivi1g04040 655 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vivi1g04040 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 652 - -
Vivi1g04040 655 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Vivi1g04040 655 Gene3D Transferase(Phosphotransferase) domain 1 411 611 - -
Vivi1g04040 655 SMART serkin_6 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04040 655 ProSiteProfiles Protein kinase domain profile. 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04040 655 MobiDBLite consensus disorder prediction 630 655 - -
Vivi1g04040 655 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 20 124 - -
Vivi1g04040 655 FunFam Cysteine-rich receptor-like protein kinase 10 133 237 - -
Vivi1g04040 655 Pfam Salt stress response/antifungal 145 234 IPR002902 -
Vivi1g04040 655 Pfam Salt stress response/antifungal 26 121 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04040 Vivi-Chr1 85702179 85705714 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04040 9 655 Receptor kinase-like Gene Family AT4G21410 46.972 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g04040 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04040 - - mtr:11442310 831.632