Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04027 ATGAATACAGTAGATGGAAGAAAGAAAAACACAGGGCGCAAGAAGATTGATATCAAGAAAGTTGAAAAACAATCCAACAAACTAGTGACATTCTCAAAAAGAAAACAAGGTTTATTCCAAAAAGCAACTGAACTTTGTGCCTTGTGCGATGTTAATATAGCCATGATTATGTCTTCTCCTGCTGATAAACTATTCGCTTTCGGTCAACCCGACACCGACACAGTCCTCAACAACTACATCAATGGAACCACTGAGTTTGAAGATGAAAAGTCGAATTCTTCGATCTATGAAGCGTATAATAGAGAATATGAAGAGGCAGTTAAGAGGTTGGAATTGGAAAAGAAGAAATTAGTAGAAACTGAAAAATCGGCTAGGGTTTCGAATAGAGGTGAATGGTGGAATGATTCTATTGATGATATGAATAGGGAACAACTTGAACAATTTATGGTGGCGATTTATGAGTTTAGGAAGAAGCTTGCTGAAAAGGAACATGAACATTTTTGGATCATTGCAGGGGCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGACAAATTGACATGCAAATCAAACTAGTAGCAGGTGATTCTGCAGGCACAGTCTTGGCCTTTTATCTGACATCTGATCAACCAAATAGAGATGAAATAGACTTGGAATTTCTAGGAAACGTCTCTGGCCAACCATATATTCTTCAAACAAATATTTATGCAGATGGATTTGACAATAGAGAGGAAAGGATTCAACTGTGGTTTGATCCCACAAAGGACTTCCATACTTATTCTGTCTTGTGGAATCTGCACCAAATTGTGTTCATGGTGGATACAATTCCCATAAGAGTGTACAAAAACCATGCAGACAAAGGAGTAGCATTTCCTAGAAGGCAACCAATGAGTCTAAAAGCAACCCTTTGGAATGGTGATAGTTGGGCAACAAGAGGTGGCCAAGATAAAATTGATTGGAAAAATGGACCTTTTATAGCTTCATTTAGAAACTATAAAATTGATGCTTGTGTGTGGAAAGGGAACCCAAGATTTTGTAGAGCCTCAAACTCAAACAATTGGTGGAACCAATATAACTTTAGCTCATTAACATCTATACAAAGAAGGTGGTTTAAATGGGTTAGGAAATATCATTTGATTTATGATTATTGTCAAGATAATGAAAGGTTCCAAAGTAATCTTCCTAGGGAATGTTCTCTGGAGGATGATTGCTTGTTTGGTTTCTTTCTCTCTAAGTTTGGTTTTCTTTAG 1251 0.3685 MNTVDGRKKNTGRKKIDIKKVEKQSNKLVTFSKRKQGLFQKATELCALCDVNIAMIMSSPADKLFAFGQPDTDTVLNNYINGTTEFEDEKSNSSIYEAYNREYEEAVKRLELEKKKLVETEKSARVSNRGEWWNDSIDDMNREQLEQFMVAIYEFRKKLAEKEHEHFWIIAGAGFASNQMFLFGQIDMQIKLVAGDSAGTVLAFYLTSDQPNRDEIDLEFLGNVSGQPYILQTNIYADGFDNREERIQLWFDPTKDFHTYSVLWNLHQIVFMVDTIPIRVYKNHADKGVAFPRRQPMSLKATLWNGDSWATRGGQDKIDWKNGPFIASFRNYKIDACVWKGNPRFCRASNSNNWWNQYNFSSLTSIQRRWFKWVRKYHLIYDYCQDNERFQSNLPRECSLEDDCLFGFFLSKFGFL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04027 416 CDD GH16_XET 171 398 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vivi1g04027 416 FunFam Xyloglucan endotransglucosylase/hydrolase 166 400 - -
Vivi1g04027 416 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Vivi1g04027 416 Gene3D - 155 404 - -
Vivi1g04027 416 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 172 398 IPR044791 GO:0004553
Vivi1g04027 416 Coils Coil 96 123 - -
Vivi1g04027 416 Gene3D - 24 106 IPR036879 GO:0003677|GO:0046983
Vivi1g04027 416 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vivi1g04027 416 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vivi1g04027 416 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vivi1g04027 416 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Vivi1g04027 416 ProSitePatterns Glycosyl hydrolases family 16 active sites. 215 225 IPR008263 GO:0004553|GO:0005975
Vivi1g04027 416 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vivi1g04027 416 SUPERFAMILY Concanavalin A-like lectins/glucanases 171 401 IPR013320 -
Vivi1g04027 416 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 77 329 IPR000757 GO:0004553|GO:0005975
Vivi1g04027 416 Pfam Glycosyl hydrolases family 16 170 321 IPR000757 GO:0004553|GO:0005975
Vivi1g04027 416 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vivi1g04027 416 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 349 398 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04027 Vivi-Chr1 85217509 85221699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04027 178 400 Glycoside Hydrolase AT2G14620 73.543 8.73e-132 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g04027 Glyco_hydro_16 9.9e-50 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04027 K08235 - gmx:100793169 449.129