Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04026 ATGAACACAGTTAACCAAAGAAAGAAAACCATGGGACGCAAGAAAATCGAAATCAAGAAAGTCGAAAAAGAAACCAACAAGCAAGTTACATTCTCAAAAAGAAGATCCGGTTTATTCAAAAAAGCTTGCGAACTTTGCGTCTTATGTGATGTTCATCTCGCCATCGTTGTGTTTTCACCTGCTGATAAACTATATTGCTGTGGTAGACCAAACACCGACGTGATCCTCAACAGTTACATCAAAGGAACCACCGAGTTTGAGGATCAGAAGTCGACGGGTGATTCCTCGATCTGCGAGCAGTATAATAGAGAATATCAAGAAGCCCTAAAAATGTTGGAAATGGAAAAGAAGAAACTTGTGGATATTGAGAATTTGGCTAAGGGTTGGAATAGAGTTGGATGGTGGAATGATTCTATTGATGATATGAGTGTGGAACAGCTTGAACAGTTTATGATGTCAATTTTTGAACTAAGGAGGAAGCTTGCTGAAAAAGAACATGAACAACTTATGATGTTTTCTATGTAA 525 0.381 MNTVNQRKKTMGRKKIEIKKVEKETNKQVTFSKRRSGLFKKACELCVLCDVHLAIVVFSPADKLYCCGRPNTDVILNSYIKGTTEFEDQKSTGDSSICEQYNREYQEALKMLEMEKKKLVDIENLAKGWNRVGWWNDSIDDMSVEQLEQFMMSIFELRRKLAEKEHEQLMMFSM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04026 174 Gene3D - 23 108 IPR036879 GO:0003677|GO:0046983
Vivi1g04026 174 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vivi1g04026 174 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vivi1g04026 174 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vivi1g04026 174 Coils Coil 98 125 - -
Vivi1g04026 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 65 IPR002100 GO:0003677|GO:0046983
Vivi1g04026 174 PANTHER MADS BOX PROTEIN 13 162 - -
Vivi1g04026 174 SUPERFAMILY SRF-like 11 81 IPR036879 GO:0003677|GO:0046983
Vivi1g04026 174 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vivi1g04026 174 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vivi1g04026 174 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04026 Vivi-Chr1 85208117 85208641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04026 8 159 Type I MADS-box Gene Family AT5G60440 40.252 3.20e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g04026 SRF-TF 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04026 - - cam:101502875 224.942