Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04025 ATGCGAGAAGTTTTTGATCTGGGAGCAAAGGTGGAGAACTTCGGGTATCCAGTGGAGAATCGGTTTGTTGTTCTACAGGAAACAAACGCGCCACTTCCAGTTTCAATCATGTCAACTGAAAAGAAAACTTGTGGTCGCAAAAAGATTGAGATGAAAAAGATGAGCAAAGAGAGCAACCTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGAGTCTTCAAGAAAGCCAGTGAGCTTTGCACACTCTGTGGTGCAGATGTTGCTCTCGTTGTATTCTCACCTGGAGAGAAGGTGTTTTCCTTTGGTCGCCCACATGTTGATACGGTCATAGATCGTTATCTATCACGTGTTCCACCCCAAAACAATGACACCATGCAATTTATTGAGGCTCAACGTAGCGCCAATGTGCGTGAGCTCAATAACCAATTAACTCAAATCAACAATACGTTGGACATTGAAAAAATTCGTGGTGATGAGTTGAGCCATTTGCGCAAAGTAACTGAAGCTCAATTTTGGTGGGCTTGTCCCATTGATGGAATGAATATGGCTCAAATTAAATTATTCAAAAAGGGCTTGTCCCATCATCAAGGAAATCTTCAACAAACTCAAATGTTTCAACCTCAATTTTTTCAGAACCCCATGTTGCAATCTCATTTGTTTGGCTTCAACAATATGGGAGGAAGAGGCAGATATGGACCCTTCGAATTCTTTTGA 711 0.4219 MREVFDLGAKVENFGYPVENRFVVLQETNAPLPVSIMSTEKKTCGRKKIEMKKMSKESNLQVTFSKRRSGVFKKASELCTLCGADVALVVFSPGEKVFSFGRPHVDTVIDRYLSRVPPQNNDTMQFIEAQRSANVRELNNQLTQINNTLDIEKIRGDELSHLRKVTEAQFWWACPIDGMNMAQIKLFKKGLSHHQGNLQQTQMFQPQFFQNPMLQSHLFGFNNMGGRGRYGPFEFF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04025 236 Gene3D - 124 202 - -
Vivi1g04025 236 FunFam Agamous-like MADS-box protein AGL62 56 122 - -
Vivi1g04025 236 Gene3D - 57 123 IPR036879 GO:0003677|GO:0046983
Vivi1g04025 236 Coils Coil 135 155 - -
Vivi1g04025 236 SUPERFAMILY SRF-like 45 123 IPR036879 GO:0003677|GO:0046983
Vivi1g04025 236 CDD MADS_MEF2_like 45 113 IPR033896 GO:0000977|GO:0045944
Vivi1g04025 236 PRINTS MADS domain signature 46 66 IPR002100 GO:0003677|GO:0046983
Vivi1g04025 236 PRINTS MADS domain signature 66 81 IPR002100 GO:0003677|GO:0046983
Vivi1g04025 236 PRINTS MADS domain signature 81 102 IPR002100 GO:0003677|GO:0046983
Vivi1g04025 236 ProSiteProfiles MADS-box domain profile. 44 104 IPR002100 GO:0003677|GO:0046983
Vivi1g04025 236 PANTHER MADS BOX PROTEIN 46 200 - -
Vivi1g04025 236 SMART madsneu2 44 103 IPR002100 GO:0003677|GO:0046983
Vivi1g04025 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 54 100 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04025 Vivi-Chr1 85155367 85157968 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04025 41 223 Type I MADS-box Gene Family AT5G60440 48.691 4.52e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g04025 SRF-TF 4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04025 - - vvo:131611248 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04025 1 85155367 85157968 Vivi1g04025 1 85155367 85157968 ECH