Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04021 ATGTCAACTGGAAGGAAAAGTCGTGGTCGCCAAAAGATTGAAATGAAAAAGATGAGCAATGAGAGCAATTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGGCTCTTTAAGAAAGCCAATGAGCTTTGCACACTCTGTGGTGTAGATGTTGCTCTTGTTGTATTCTCACCTAGTGAGAAGGTGTTTTCCTTTGGTCACCCACATGTTGATACGGTCATAGATCGTTATCTATCACGAGTCCCACCCCAAAACAACAATGGCCCGATGCAATTCATTGAGGCTCACCGTAGTGCCAACATGCGCGATCTCAACAACCAATTGACTCAAATCAACCATCAATTGGACATTGAAAGAAAGCGCGGTGATGAGCTGAGCCATTTGCGCAAGGCAAATGAGACTCAATTTTGGTGGATGGGTCCCATTGATGGGATGAATAGGGCTCAACTTGAATTAGTCAAGAAAGCCTTGGAGGAACTTAAGAAACTAGTTGTACAACAAGCCGATATGCTTGTTATTCAGGGTGCACCTACCCAAACTATTCCATTTTTTGTTGGAAATGGTTCCAACTCTAACACGCCAATCCATCACCCGACAAATCCTCAACGAGTTCAAATGTTTCAACAACAATTTTTTCAGAATCCCATGATGCAACCGCATTTGTTTTGTTTCAACAATATGGGTGGAAGTGGCGGATATGGACCCTCTGGATTCTTTTGA 717 0.4324 MSTGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKANELCTLCGVDVALVVFSPSEKVFSFGHPHVDTVIDRYLSRVPPQNNNGPMQFIEAHRSANMRDLNNQLTQINHQLDIERKRGDELSHLRKANETQFWWMGPIDGMNRAQLELVKKALEELKKLVVQQADMLVIQGAPTQTIPFFVGNGSNSNTPIHHPTNPQRVQMFQQQFFQNPMMQPHLFCFNNMGGSGGYGPSGFF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04021 238 PANTHER MADS BOX PROTEIN 10 165 - -
Vivi1g04021 238 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vivi1g04021 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vivi1g04021 238 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vivi1g04021 238 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vivi1g04021 238 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vivi1g04021 238 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vivi1g04021 238 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
Vivi1g04021 238 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vivi1g04021 238 Coils Coil 100 120 - -
Vivi1g04021 238 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vivi1g04021 238 Gene3D - 88 173 - -
Vivi1g04021 238 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04021 Vivi-Chr1 84961302 84962018 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04021 5 190 Type I MADS-box Gene Family AT5G60440 53.968 4.94e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g04021 SRF-TF 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04021 - - mtr:11438274 276.559