Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04019 ATGTCAACTGGAAGGAAAAGTCGTGGTCGCCAAAAGATTGAAATGAAAAAGATGAGCAATGAGAGCAATTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGGCTCTTTAAGAAAGCCAGTGAGCTTTGCACACTCTGTGGTGTAGATGTTGCTCTTGTTGTATTCTCACCTAGTGAGAAGGTGTTTTCCTTTGGTCACCCACATGTTGATACGGTCATAGATCGTTATCTATCACGAGTCCCACCCCAAAACAATGGCCCGATGCAATTCATTGAGGCTCACCGTAGTGCCAACATGCGCGATCTCAACAACCAATTGACTCAAATCAACCATCAATTGGACATTGAAAGAAAGCGCGGTGATGAGCTGAGCCATTTGCGCAAGGCAGATGAGACTCAATTTTGGTGGACGGGTCCCATTGATGGGATGAATAGGGCTCAACTTGAATTAGTCAAGAAAGTCTTGGAGGAACTTAAGAAACTTGTTGTACAACAAGCTGATAGGCTTGTAATTCAGGGTGCACCTACCCAAACTATTCCATTTTTTATTGGAAATGGTTCCAACTCTAACATGTCAATCCATCACCCGACAAATTCTCAACAAGCTCAAATATTTCAGCAACAATTTTTTCAGAATCCCATGATGCAACCCCATTTATTTGGTTTCAACAATATGGGTGGAAGTGGCGGATATGGACCCTCCGGATTCTTTTGA 714 0.4314 MSTGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGVDVALVVFSPSEKVFSFGHPHVDTVIDRYLSRVPPQNNGPMQFIEAHRSANMRDLNNQLTQINHQLDIERKRGDELSHLRKADETQFWWTGPIDGMNRAQLELVKKVLEELKKLVVQQADRLVIQGAPTQTIPFFIGNGSNSNMSIHHPTNSQQAQIFQQQFFQNPMMQPHLFGFNNMGGSGGYGPSGFF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04019 237 Coils Coil 99 119 - -
Vivi1g04019 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vivi1g04019 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vivi1g04019 237 PANTHER MADS BOX PROTEIN 10 164 - -
Vivi1g04019 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vivi1g04019 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vivi1g04019 237 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vivi1g04019 237 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Vivi1g04019 237 Gene3D - 87 174 - -
Vivi1g04019 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vivi1g04019 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vivi1g04019 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vivi1g04019 237 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04019 Vivi-Chr1 84950733 84951446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04019 5 189 Type I MADS-box Gene Family AT5G60440 54.255 2.37e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g04019 SRF-TF 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04019 - - mtr:11438274 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04019 1 84950733 84951446 Vivi1g04019 1 84950733 84951446 ECH