Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03987 ATGTCTCAAGGATATAAAATCATTCATTGTCTCAAAGGTCTTCATGTTACCTTTTTCAATCGGCAGACAAATCATGAGGTTCTATATTGTGATGAAGAAATAAAGCCTAAGGTTGGACAAATTTTTGATTCACTCGAAGATGGTGATTTTTTTTACAAAAGATATGCACATAGTGTTGGTTTTAGTGTGCGTTGTTCATCAGAAAATAAAAATAAAGATGGTGTCATACGTTGGAAGTACTTTGTTTGCTCTAAAGAGGGTTACAAACCAAATGTATCAAAAGAGAACGAAGTGAGTGAATTGGGAGTTAAAGTCAAGAGGAGGAGTCTTACTAGAGAAGGATGTGATGCAAAAGTTGCTTTCAAGTTGTTAGAGGGAGGAAAATATGAGCTAACTCGATTTCAAGAGAGTCATACACATGCACTTGCCTCACCTAAAAAGAGACAATTTCTTAGATCTGCAAGAAAAGTGAATAATATTCATAAGAGTATAATGTTTGCAAATAGTAGAGCAAATATTGGTCCTTCAAAAACATACCATTTGTTGAAGGAACAACTAGGTGGTTATGAAAATATTGGGTGCACACACAGAGATCTACAAAATTCGTTTAGAGATTTAAAGACCTTAATCAAAGATTCAGATGCATATGTCTTCATTGATAACTTTAAAAGGAAGCAAGAAGTGAATCCCTCGTTTTATTTTGCATACGAGGTTGATGTTGAAGATCGACTGAAACACGTTTTCTGGGCAGATGGAATTTGTAGAAAAAATTACTTCTTATTTGGAGATGTAATGTCGTTCGACACTACATATGAAACAAATAAATATTCCATGATATTTGCACCATTTACTGGAGTGAACCATCATAGACAGTCTGTTACTTTTGGAGCTGCCTTCTTAGCAAATGAGAAAGCTGATTCATTCATTTGGTTATTTGAAAAGTTTTTGGAAGCTATGGGGGGGAATAAACCAAATCTTATAATAACAGATCAAGACCCTGCCATGAAAATTGCAATTGAGAAGGTCTTTGATTCTTCTGCACATAGGTTTTGTATGTGGAACATCATGAAAAACGTTTCTGAAAAGGTGGGTGTTTCCTTGAATTCTAATGAGGAGTTCAATAATAAATTTAAGTCATGTGTTTGGGGATCAGACACTTCTGAAAATTTTGAAGCATCATGGAAATCCATCATGATTGAGTTTGGATTGCAAAAGAATGAATGGTTGTCACACATGTATAATATTCGAAATATGTGGATCCCGACTTACTTCAGAGATATATTTTTGGCTGGCGTATTGAGAACAACCTCAAGATCAGAGAGTGAAAATTCCTTCTATGGTAACTTTTTAAATCCTACTATTGGCTTGGTAGAGTTTTGGATGAGATTTGAGTCTGCTATAGAAGCTCAAAGGCATAAAGAGTTACTTGCTGATAATACTTCACTTCATTCTTTACCAATACTAAAATTAGACCGTGGATTAGAGAGGCATGGTAGGGATATTTACACTCGTGAAAACTTTTATATATTTCAAAATGAATTATGGATTGGATGTATAGACTGCGGAGTAGAAAATATAAATCAAAATGATGGTGTGGATGTTTTACACATAATTGATAATAGTGTGCCAAATGGTAAAGTAAGCGAGGTGGTTTATAATGTTTCTGATTATAGCTCGACTTGTTCGTGCAATATGTTTCAATCACAAGGCATACCATGTAGACACATACTCTATGTTTTAAGAGGAAAAGGTTTAAATGAAATACCGAACAAGTATATTCTAAATAGATGGACCAAAATGGCGACCAACAAGTCTGTTTTTAATGTTGATGGAAAGGACTTAGAAGGTTTGTCCGAAACAAAAAATGAGAGACAACTCATTTCAGAGGTATGGGATCATTTATATATGTGCATGCATATGGTTGGGCAGTGTAAGGAGAAGTTGCTTCCTATAACAAATGGATTTGCTAACATTAAAAAACAATTATCTGAATTTGAAGATGATTCTTTACCCACCAAAACAAATGAGCTAGAGTCTTTTATTGGTTTTGATCTTTCTAAAGAAGTGAAAATTCATCCCCCACAAATTTCAAAGACAAAAGGAAGTGGTAAACGAATTAAAGGAGGAAAAGAGAAGGCTATTGAACAACAACAGAAAAGATCCAGACTTTGTAAAGCATGTGGCCAATATGCATCTCATGACACTCGTAATTGTCCATCGAAATCATCTCCTTAA 2235 0.345 MSQGYKIIHCLKGLHVTFFNRQTNHEVLYCDEEIKPKVGQIFDSLEDGDFFYKRYAHSVGFSVRCSSENKNKDGVIRWKYFVCSKEGYKPNVSKENEVSELGVKVKRRSLTREGCDAKVAFKLLEGGKYELTRFQESHTHALASPKKRQFLRSARKVNNIHKSIMFANSRANIGPSKTYHLLKEQLGGYENIGCTHRDLQNSFRDLKTLIKDSDAYVFIDNFKRKQEVNPSFYFAYEVDVEDRLKHVFWADGICRKNYFLFGDVMSFDTTYETNKYSMIFAPFTGVNHHRQSVTFGAAFLANEKADSFIWLFEKFLEAMGGNKPNLIITDQDPAMKIAIEKVFDSSAHRFCMWNIMKNVSEKVGVSLNSNEEFNNKFKSCVWGSDTSENFEASWKSIMIEFGLQKNEWLSHMYNIRNMWIPTYFRDIFLAGVLRTTSRSESENSFYGNFLNPTIGLVEFWMRFESAIEAQRHKELLADNTSLHSLPILKLDRGLERHGRDIYTRENFYIFQNELWIGCIDCGVENINQNDGVDVLHIIDNSVPNGKVSEVVYNVSDYSSTCSCNMFQSQGIPCRHILYVLRGKGLNEIPNKYILNRWTKMATNKSVFNVDGKDLEGLSETKNERQLISEVWDHLYMCMHMVGQCKEKLLPITNGFANIKKQLSEFEDDSLPTKTNELESFIGFDLSKEVKIHPPQISKTKGSGKRIKGGKEKAIEQQQKRSRLCKACGQYASHDTRNCPSKSSP 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03987 744 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 625 IPR031052 GO:0006355
Vivi1g03987 744 MobiDBLite consensus disorder prediction 694 716 - -
Vivi1g03987 744 ProSiteProfiles Zinc finger SWIM-type profile. 552 584 IPR007527 GO:0008270
Vivi1g03987 744 Pfam MULE transposase domain 264 358 IPR018289 -
Vivi1g03987 744 Pfam SWIM zinc finger 554 580 IPR007527 GO:0008270
Vivi1g03987 744 SMART 26again6 559 586 IPR006564 GO:0008270
Vivi1g03987 744 Pfam FAR1 DNA-binding domain 51 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03987 Vivi-Chr1 84042586 84045308 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g03987 MULE 7.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03987 - - mtr:112420857 1029.24