Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03986 ATGGTTGTAGGAGATTCGGGACTACTCATTACAGGAAGTGCTGACCAGACTGCGAAGCTATGGAATGTGCAGAGTGGTCAGCAATTGTTTACTTTCAACTTTGACTCCCCTGCAAGGTCTGTTGACTTTTCCGTTGGTGATAAGCTTGCTGTTATCACCACTGACCCATTCATGGAACTCACTTCAGCAATCCATGTCAAACGCATTGCAAAAGATCCTGCAGACCAGACTGGGGAGTCTTTGCTTGTTATTAAGGGCCCTCAGGGAAGAATCAATAGAGCCATATGGGGCCCCCTCAACAGAACCATTATCAGTGCCGGAGAAGACTGTATTATTCGTATTTGGGATTCTGAGACAGGAAATCTACTTAGGGAGTCGGACAAGGAATCCAGCCACAAAAAGACAGTAACATCACTGGCCAAATCTGCTGATGGCTCACATTTCTTGACGGGCTCCCTTGATAAGTCTGCTAAGATTTGGGATAGCAGAACATTGTCTCTAATCAAGACATATGTGACAGAACGCCCTGTCAATGCAGTTGCAATGTCGCCTCTCCTTGATCATGTATGTTTGTGTATTGTGAATTACTTAATATAA 597 0.4456 MVVGDSGLLITGSADQTAKLWNVQSGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELTSAIHVKRIAKDPADQTGESLLVIKGPQGRINRAIWGPLNRTIISAGEDCIIRIWDSETGNLLRESDKESSHKKTVTSLAKSADGSHFLTGSLDKSAKIWDSRTLSLIKTYVTERPVNAVAMSPLLDHVCLCIVNYLI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03986 198 SMART WD40_4 119 161 IPR001680 GO:0005515
Vivi1g03986 198 SMART WD40_4 77 116 IPR001680 GO:0005515
Vivi1g03986 198 SUPERFAMILY WD40 repeat-like 5 189 IPR036322 GO:0005515
Vivi1g03986 198 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 125 IPR001680 GO:0005515
Vivi1g03986 198 ProSitePatterns Trp-Asp (WD) repeats signature. 9 23 IPR019775 -
Vivi1g03986 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 5 191 - -
Vivi1g03986 198 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 31 IPR001680 GO:0005515
Vivi1g03986 198 PRINTS G protein beta WD-40 repeat signature 103 117 IPR020472 -
Vivi1g03986 198 PRINTS G protein beta WD-40 repeat signature 148 162 IPR020472 -
Vivi1g03986 198 PRINTS G protein beta WD-40 repeat signature 9 23 IPR020472 -
Vivi1g03986 198 ProSitePatterns Trp-Asp (WD) repeats signature. 103 117 IPR019775 -
Vivi1g03986 198 Gene3D - 2 195 IPR015943 GO:0005515
Vivi1g03986 198 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 164 - -
Vivi1g03986 198 Pfam WD domain, G-beta repeat 82 116 IPR001680 GO:0005515
Vivi1g03986 198 Pfam WD domain, G-beta repeat 130 161 IPR001680 GO:0005515
Vivi1g03986 198 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 170 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03986 Vivi-Chr1 84027927 84028851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03986 5 191 Eukaryotic Initiation Factors Gene Family AT2G46290 70.370 2.02e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03986 K03246 - gmx:100793485 342.813