Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03978 ATGGCCAGTTTTGGAGGATCCATACAGAAGTGCAGGGCATGTGAAAAAACAGTTTATCTTGTTGAGAAGCTAGCCGCAGATGGTCGTATATATCACAAGGCCTGCTTTCGATGCCACCATTGCCAGAATACCCTTAAGCTAAGCAACTACTGTTCTATCGATGGGGTGCTCTATTGCAGACCGCACTATGATCAACTCTTTAAGAGAACTGGAAGCCTGGACAAAAGTTTTGAAGGAACACCCAAAATTCAGAAACCAGAAAGATTCGAGAGTGAGAACGCCAAAACACTGGCAAAGGCTTTTGGGGGAACAAAAGACATATGCATGTGTTGCAAAAAGACAGTGTATGCCACTGAGAAGGTTACGGTTAACGGGACTCCCTATCACAAGGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAATTTTGTTACACATGACACAAGGCTCTACTGCAAACATCATCACATTCAACTTTTCAAGGAGAAAGGGAATTACAGTCAGCTCGAGACTACTGAAGTTTCTGCTTAA 543 0.4309 MASFGGSIQKCRACEKTVYLVEKLAADGRIYHKACFRCHHCQNTLKLSNYCSIDGVLYCRPHYDQLFKRTGSLDKSFEGTPKIQKPERFESENAKTLAKAFGGTKDICMCCKKTVYATEKVTVNGTPYHKGCFKCTYGGCTISSSNFVTHDTRLYCKHHHIQLFKEKGNYSQLETTEVSA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03978 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Vivi1g03978 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 133 - -
Vivi1g03978 180 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Vivi1g03978 180 FunFam LIM domain and actin-binding 1 102 172 - -
Vivi1g03978 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 36 - -
Vivi1g03978 180 PANTHER OS06G0237300 PROTEIN 4 92 - -
Vivi1g03978 180 FunFam LIM domain and actin-binding 1 5 75 - -
Vivi1g03978 180 Gene3D Cysteine Rich Protein 103 172 - -
Vivi1g03978 180 Gene3D Cysteine Rich Protein 7 75 - -
Vivi1g03978 180 Pfam LIM domain 108 163 IPR001781 -
Vivi1g03978 180 Pfam LIM domain 11 65 IPR001781 -
Vivi1g03978 180 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vivi1g03978 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Vivi1g03978 180 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vivi1g03978 180 SMART lim_4 107 159 IPR001781 -
Vivi1g03978 180 SMART lim_4 10 62 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03978 Vivi-Chr1 83822017 83823273 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vivi1g03978 LIM 5.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03978 K09377 - gmx:100306027 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03978 1 83822017 83823273 Vivi1g03978 1 83822017 83823273 ECH