Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03955 ATGGATCCTTGTGAGCAAAGTTGTGAAGAATGGAGTTCACTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGCCAGTTACTTGATAACTGTCAAGTCCCTCAGCATGATTATCCAAATTTCAATTTTGAAGTTCCATCTACATTATGGCCTGGACATGACTCCACAATAGTGAGCATGAATAACAGTGACCATTTTCCTCAAAATGTTGATAATAGTAACATCAATTTTTTGAGTTTTTTACATGGAAGTGACACAATTTCTGATGCAAATGGTGGTTACAACTGTTTCAATGACGATCAAGTAGCAAACATTGGATACATATCGATGCTGAATGGTGATTTCGGCGCTTATAGTGTTCAAAGGAATGATAGTGCGCAGATAACTGAAAACAACACTGATGAAGAGTTTTGTCAAGAGGTTATTGGTGACAAGAATTTTCAGGCTCACATGGAATGTGAAGAGTTACTGGTTTCTGAATCAGTGGAAGATGGTGTTAACATCAACATGGAGAAGTCAGGAAAAAGATCTAGGAGCTCAATGAAGGTACAAAAGAATAAGAAAAATATCAAACCTAGAAAGAAGTCAAAGTCTATAAGCAACACTGAAGAGGATGAAAGTCCTGATCTTCAGGAGCAGAATTTGAGCTCAGAGGAGGATGACTTCAATGCTTCTCAGAGGCTAAATGAAGAAGGGTCTTCAATCGTAAACCGGAACTATTCCACATCTATGAAGTTAAAAGGAAAATCAAGATGTGACAGAGGTTCTTCCACTGATCCACAAGGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATTCTACAAAGCCTAGTCCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTGCAGGTCCAAATTAAGCTTCTTAGCTCTGATGATCACTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGATTAAACCTCAACATTACACCAACCAAATTTTCAGATATTTAG 1041 0.3775 MDPCEQSCEEWSSLSGFYTAEEADFMGQLLDNCQVPQHDYPNFNFEVPSTLWPGHDSTIVSMNNSDHFPQNVDNSNINFLSFLHGSDTISDANGGYNCFNDDQVANIGYISMLNGDFGAYSVQRNDSAQITENNTDEEFCQEVIGDKNFQAHMECEELLVSESVEDGVNINMEKSGKRSRSSMKVQKNKKNIKPRKKSKSISNTEEDESPDLQEQNLSSEEDDFNASQRLNEEGSSIVNRNYSTSMKLKGKSRCDRGSSTDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLNITPTKFSDI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03955 346 MobiDBLite consensus disorder prediction 219 242 - -
Vivi1g03955 346 Pfam Helix-loop-helix DNA-binding domain 268 308 IPR011598 GO:0046983
Vivi1g03955 346 CDD bHLH_AtIND_like 259 321 - -
Vivi1g03955 346 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 128 317 IPR045843 GO:0003700|GO:0006355
Vivi1g03955 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Vivi1g03955 346 MobiDBLite consensus disorder prediction 171 242 - -
Vivi1g03955 346 SMART finulus 264 313 IPR011598 GO:0046983
Vivi1g03955 346 Gene3D - 266 319 IPR036638 GO:0046983
Vivi1g03955 346 FunFam Basic helix-loop-helix transcription factor 259 316 - -
Vivi1g03955 346 MobiDBLite consensus disorder prediction 247 266 - -
Vivi1g03955 346 MobiDBLite consensus disorder prediction 181 197 - -
Vivi1g03955 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 324 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03955 Vivi-Chr1 83459225 83461062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03955 10 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.746 2.67e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g03955 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03955 - - tpra:123881885 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03955 1 83459225 83461062 Vivi1g03955 1 83459225 83461062 ECH