Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03954 ATGGAAGCTGCCCAATTGATTTCTCAAGAGTGGGATTCTCTAAGTGGACAGTACACAGCTGAAGAAGCTGATTTCATGACTCACTTCCTTGGTGGTAACTATTCATGTTTTCCTTCTAATGTTGCAAATGCTAATGCTAATTTTATGTATTTCTCTCAAGGGATTAGCTCAAAGACTGATTATAGTGATGACATATTTCCTACCATTACAGCAAGTAATGGACCATACCTATGTAATCCGGCAACAGACATTGATTCACTATCCATGTTTTTTAGCATTGACCATGAAAGGTTATGTTTAGAGCCAATGTTTTTTAGTCCACAATATTTGGATGATAACTTAATCAAACAGATAAACTATGAAGGCATTGATCATGAAAGGTCATGTTTAGAGCCAGCTTCACAAGCGGATCGAACTATAAACATGGAGAACCCTGCTAAAAGATTTAGGAGCTCATTAGAGGTTTCAGAAAACACGAGAAATGGCTCCAACAACTGTTTTTCACATAACTCAAATGCTTTTTTGGTGCTAAATGGAGGAACATCTCCAAGTCTAAACCCAAAAGAAAGCGCAGTGACGAATTTAGGTAGAAAATCAAGAGCAAGAAATGGTCCTGCTACGGATTCTCCGAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAGACCCTTGTCCCAAATGGAACTAAGGTGGACATTAGTACCATGCTTGAGGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTTCTAAGCTCTGAGGATATGTGGATGTATGCTCCATTAGCTTACAATGGAATCAACATTGGATTAGACCTCACCTTTTCTTCTCCAACAAATTAA 873 0.3792 MEAAQLISQEWDSLSGQYTAEEADFMTHFLGGNYSCFPSNVANANANFMYFSQGISSKTDYSDDIFPTITASNGPYLCNPATDIDSLSMFFSIDHERLCLEPMFFSPQYLDDNLIKQINYEGIDHERSCLEPASQADRTINMENPAKRFRSSLEVSENTRNGSNNCFSHNSNAFLVLNGGTSPSLNPKESAVTNLGRKSRARNGPATDSPSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPLAYNGINIGLDLTFSSPTN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03954 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Vivi1g03954 290 Gene3D - 208 272 IPR036638 GO:0046983
Vivi1g03954 290 SMART finulus 211 260 IPR011598 GO:0046983
Vivi1g03954 290 FunFam Basic helix-loop-helix transcription factor 206 263 - -
Vivi1g03954 290 Pfam Helix-loop-helix DNA-binding domain 215 255 IPR011598 GO:0046983
Vivi1g03954 290 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 277 - -
Vivi1g03954 290 MobiDBLite consensus disorder prediction 186 210 - -
Vivi1g03954 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 271 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03954 Vivi-Chr1 83432049 83433423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03954 166 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 65.812 1.41e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g03954 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03954 - - psat:127092927 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04271 2 156407321 156409433 Vivi1g03954 1 83432049 83433423 PCT