Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03953 ATGGAAGCTGCCCAATTGATTTCTCAAGAGTGGGATTCTCTTAGTGGACAGTGCACGGCTGAAGAAGCTGATTTCATGACTCACTTCCTTGGTGGCAATACCAACTATTCATATTTTCCTTCAAGTGTTGCAAATGCTAATTCTATGTGTTTCTCCCAAGGGAGTAGCACAAACACTGCTAATAGTGCTGATATATTTTCCACCACAACAAATAGTGGCATCTACTTCTGTGATAAGGAACCAAAGGTTGATTCCTTGTCCATGCTTTTTTGCTTGGGAGAAGATGCTAAATTTAGTCCACAATATTTCAATGATAGTTTTAGCCATCAGATAAATTATGAAAGCATTGATCATGAGAGGTTATGTTTGGAACCTTCTTCAGAAGAAAATAGAAGCCAAAACACGGAGAACCCTGCAAAAAGATTGAGGACCTCAAATGCTTCCATGGAGCTAAATGAGGGAACATCTCCAATTCTAAGTCCAAAAGAACCTGAAGCGCCGAATTTATGTAGAAAATCAAGAGCAAGAAATGGTCCTGCCACTGATTCTCAGAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAGTATTGCAAACACTTGTCCCAAATGGAACTAAGGTGGACATTAGCACCATGCTTGAAGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTTCTGAGTTCTGAGGATATGTGGATGTATGCTCCATTAGCTTACAATGGAATCAACATTGGATTAGACCTCACTTTTTCATAG 783 0.3895 MEAAQLISQEWDSLSGQCTAEEADFMTHFLGGNTNYSYFPSSVANANSMCFSQGSSTNTANSADIFSTTTNSGIYFCDKEPKVDSLSMLFCLGEDAKFSPQYFNDSFSHQINYESIDHERLCLEPSSEENRSQNTENPAKRLRTSNASMELNEGTSPILSPKEPEAPNLCRKSRARNGPATDSQSIYARRRRERINERLRVLQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPLAYNGINIGLDLTFS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03953 260 MobiDBLite consensus disorder prediction 127 155 - -
Vivi1g03953 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Vivi1g03953 260 FunFam Basic helix-loop-helix transcription factor 180 237 - -
Vivi1g03953 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 245 IPR036638 GO:0046983
Vivi1g03953 260 MobiDBLite consensus disorder prediction 124 189 - -
Vivi1g03953 260 Pfam Helix-loop-helix DNA-binding domain 189 229 IPR011598 GO:0046983
Vivi1g03953 260 SMART finulus 185 234 IPR011598 GO:0046983
Vivi1g03953 260 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 251 - -
Vivi1g03953 260 Gene3D - 181 246 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03953 Vivi-Chr1 83420439 83421498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03953 165 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 76.923 1.05e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g03953 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03953 - - psat:127092927 343.969