Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03948 ATGGCTTTAGAGTTACAAGCTATGAATTCATCTCCTACCCAAACTCCTATTCCATTCCCAATCTTCAAAAACAAACCAGAGAAGAATCTTGAGCAGCACGAACACGACTCTTTGGTTAATAAGAAGAAACGATCAAAACGACCGCGGATTAGTAATCCACCCACCGAAGAAGAGTATCTCGCTCTTTGTCTCATCATGCTCGCACAAGGGAACACCAACAACAACACCAACAAGACTCGATCTCTCCGCGAAACTGAATCATCATCTTCACAATCACAACAGCAACAACAGCAAGATCAAACATCTCCGCCACCGCCACCACCGCCTGTGAAGCTGAATCACAGGTGCACCGTCTGCAACAAAGCCTTCCCATCTTATCAAGCACTCGGCGGTCACAAAGCCAGCCACCGCAAATCATCATTAGAAAACCAATCCACCACCGTCAACGACATCGCAACCACCACCGTCTCATCTCTCACCACCACCACCGGAAAGATGCACGAGTGCTCCATCTGTCACAAGAGTTTCCCTACCGGTCAAGCTCTCGGTGGACACAAACGGTGCCACTACGAAGGCGGTATCAACCACAACACCACCAGCAACAACAATCACAATATCAGTAACAGCAACGCCAACGCTAATACCAGCAGCAACATCACAATCTCTGACGTTACCGCCGCGTCCTCCTCCATCAGCCACCGCGGCTTCGACCTCAACCTCCCCGCTCCTCTCACTGAATTCTGGTCTCCGTTAACACTCGGCGGTGGAGATTCCAAGAAGACCAAACTTAACGTCAATCTCGCCGGAAATGATGAACAAGAGGTCGAAAGTCCGTTGCCGGTAACCGCCAAACGGCCGCGTTTGTTTTCAGATAAAGACGATGACGAAACGGTGTAG 897 0.4983 MALELQAMNSSPTQTPIPFPIFKNKPEKNLEQHEHDSLVNKKKRSKRPRISNPPTEEEYLALCLIMLAQGNTNNNTNKTRSLRETESSSSQSQQQQQQDQTSPPPPPPPVKLNHRCTVCNKAFPSYQALGGHKASHRKSSLENQSTTVNDIATTTVSSLTTTTGKMHECSICHKSFPTGQALGGHKRCHYEGGINHNTTSNNNHNISNSNANANTSSNITISDVTAASSSISHRGFDLNLPAPLTEFWSPLTLGGGDSKKTKLNVNLAGNDEQEVESPLPVTAKRPRLFSDKDDDETV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03948 298 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 40 242 IPR044653 GO:0003700
Vivi1g03948 298 Gene3D Classic Zinc Finger 112 189 - -
Vivi1g03948 298 MobiDBLite consensus disorder prediction 1 54 - -
Vivi1g03948 298 MobiDBLite consensus disorder prediction 268 298 - -
Vivi1g03948 298 MobiDBLite consensus disorder prediction 72 114 - -
Vivi1g03948 298 SUPERFAMILY beta-beta-alpha zinc fingers 114 189 IPR036236 -
Vivi1g03948 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Vivi1g03948 298 Pfam C2H2-type zinc finger 167 190 - -
Vivi1g03948 298 Pfam C2H2-type zinc finger 114 138 - -
Vivi1g03948 298 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Vivi1g03948 298 SMART c2h2final6 167 189 IPR013087 -
Vivi1g03948 298 SMART c2h2final6 114 136 IPR013087 -
Vivi1g03948 298 MobiDBLite consensus disorder prediction 72 99 - -
Vivi1g03948 298 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Vivi1g03948 298 MobiDBLite consensus disorder prediction 26 41 - -
Vivi1g03948 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 189 IPR013087 -
Vivi1g03948 298 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03948 Vivi-Chr1 83246829 83248055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03948 3 288 C2H2 Transcription Factor Family AT1G27730 40.411 2.66e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g03948 zf-C2H2_6 3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03948 - - vvo:131643384 525.013